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2025
Balancing act: lipid-to-protein ratios steer the aggregation fate of α-synuclein (2025)Trends in Biochemical Sciences, 50(4), 285-286. Blum, C. & Claessens, M. M. A. E.https://doi.org/10.1016/j.tibs.2025.02.001Surgeon personality diversity across generations and subspecialties (2025)Surgeon, 23(2), 78-86. Sier, V. Q., Schmitz, R. F., Wertenbroek, R. W. A. M., Schepers, A., van der Vorst, J. R., Beetz, I., Bessems, M. A., Boerma, D., Castenmiller, P. H., De Bruin, J. L., De Jonge, C., Den Hoed, P. T., Derksen, R. J., Doornebosch, P. G., Duijff, J. W., Engelen, M. P. J., Evers, D. J., Furnée, E. J. B., Gardenbroek, T. J., … Van Essen, J. A.https://doi.org/10.1016/j.surge.2025.02.003Toward real-time margin assessment in breast-conserving surgery with hyperspectral imaging (2025)Scientific reports, 15(1). Article 9556 (E-pub ahead of print/First online). Jong, L. J. S., Veluponnar, D., Geldof, F., Sanders, J., Da Silva Guimaraes, M., Vrancken Peeters, M. J. T. F. D., van Duijnhoven, F., Sterenborg, H. J. C. M., Dashtbozorg, B. & Ruers, T. J. M.https://doi.org/10.1038/s41598-025-94526-9Detecting cancer with hyperspectral imaging: To improve the outcome of breast-conserving surgery (2025)[Thesis › PhD Thesis - Research UT, graduation UT]. University of Twente. Jong, L.-J. S.https://doi.org/10.3990/1.9789036563673Optics and acoustics for margin assessment during breast-conserving surgeries (2025)[Thesis › PhD Thesis - Research UT, graduation UT]. University of Twente. Veluponnar, D.https://doi.org/10.3990/1.9789036565028Kinetic Pathways to Gelation and Effects of Flow-Induced Structuring in Depletion Gels (2025)Industrial & engineering chemistry research, 64(8), 4581–4595. Colombo, G., Lehéricey, P., Müller, F. J., Majji, M. V., Vutukuri, H. R., Swan, J. W. & Vermant, J.https://doi.org/10.1021/acs.iecr.4c03873Hybrid registration of the fibula for electromagnetically navigated osteotomies in mandibular reconstructive surgery: a phantom study (2025)International journal of computer assisted radiology and surgery, 20(2), 369–377. Aukema, L. M. N., de Geer, A. F., van Alphen, M. J. A., Schreuder, W. H., van Veen, R. L. P., Ruers, T. J. M., Siepel, F. J. & Karakullukcu, M. B.https://doi.org/10.1007/s11548-024-03282-0Real-time intraoperative ultrasound registration for accurate surgical navigation in patients with pelvic malignancies (2025)International journal of computer assisted radiology and surgery, 20(2), 249-258. Hiep, M. A. J., Heerink, W. J., Groen, H. C., Saiz, L. A., Grotenhuis, B. A., Beets, G. L., Aalbers, A. G. J., Kuhlmann, K. F. D. & Ruers, T. J. M.https://doi.org/10.1007/s11548-024-03299-5
2024
Development and external evaluation of a self-learning auto-segmentation model for Colorectal Cancer Liver Metastases Assessment (COALA) (2024)Insights into Imaging, 15(1). Article 279. Bereska, J. I., Zeeuw, M., Wagenaar, L., Jenssen, H. B., Wesdorp, N. J., van der Meulen, D., Bereska, L. F., Gavves, E., Janssen, B. V., Besselink, M. G., Marquering, H. A., van Waesberghe, J. H. T. M., Aghayan, D. L., Pelanis, E., van den Bergh, J., Nota, I. I. M., Moos, S., Kemmerich, G., Syversveen, T., … Ruers, T. M.https://doi.org/10.1186/s13244-024-01820-7Imaging Photoplethysmography (iPPG) in Head and Neck Reconstructive Surgery: A Novel Technique for Noninvasive Flap Perfusion Monitoring (2024)Lasers in surgery and medicine, 56(10), 811-820. van der Stel, S. D., Lai, M., Groen, H. C., Dirven, R., Karakullukcu, M. B., Karssemakers, L. H. E., van Gastel, M., Hendriks, B. H. W., Ruers, T. J. M. & Schreuder, W. H.https://doi.org/10.1002/lsm.23859Rotaxanes with a photoresponsive macrocycle modulate the lipid bilayers of large and giant unilamellar vesicles (2024)Communications Chemistry, 7(1). Article 255. Conthagamage, U. N. K., Rajeshwar T, R., van der Ham, S., Akhtar, N., Davis, M. L., Jayawardana, S. G., Lopez, L., Vutukuri, H. R., Smith, J. C., Smith, M. D. & García-López, V.https://doi.org/10.1038/s42004-024-01343-8The influence of the da Vinci surgical robot on electromagnetic tracking in a clinical environment (2024)Journal of robotic surgery, 18(1). Article 54. Aguilera Saiz, L., Groen, H. C., Heerink, W. J. & Ruers, T. J. M.https://doi.org/10.1007/s11701-023-01812-7Tissue-probe contact assessment during robotic surgery using single-fiber reflectance spectroscopy (2024)Biomedical optics express, 15(12), 6756-6767. de Roode, L. M., de Boer, L. L., Sterenborg, H. J. C. M. & Ruers, T. J. M.https://doi.org/10.1364/BOE.534558Stage IV colorectal cancer: Evaluating current and future treatment modalities (2024)[Thesis › PhD Thesis - Research UT, graduation UT]. University of Twente. Krul, M. F.https://doi.org/10.3990/1.9789036562195Feasibility of Diffuse Reflection Spectroscopy for Intraoperative Margin Assessment During Prostatectomy (2024)European Urology Open Science, 67, 62-68. de Roode, L. M., de Boer, L. L., Da Silva Guimaraes, M., van Leeuwen, P. J., van der Poel, H. G., Dashtbozorg, B. & Ruers, T. J. M.https://doi.org/10.1016/j.euros.2024.07.112Feasibility of Image-guided Navigation with Electromagnetic Tracking During Robot-assisted Sentinel Node Biopsy: A Prospective Study (2024)European urology (E-pub ahead of print/First online). Aguilera Saiz, L., Heerink, W. J., Groen, H. C., Hiep, M. A. J., van der Poel, H. G., Wit, E. M. K., Nieuwenhuijzen, J. A., Roeleveld, T. A., Vis, A. N., Donswijk, M. L., van Leeuwen, P. J. & Ruers, T. J. M.https://doi.org/10.1016/j.eururo.2024.07.022Separating Surface Reflectance from Volume Reflectance in Medical Hyperspectral Imaging (2024)Diagnostics, 14(16). Article 1812. Jong, L. J. S., Post, A. L., Geldof, F., Dashtbozorg, B., Ruers, T. J. M. & Sterenborg, H. J. C. M.https://doi.org/10.3390/diagnostics14161812Python analysis script: Lifetime Fit (2024)[Non-textual form › Software]. GitHub. Molenaar, R.https://github.com/RobertMolenaar-UT/Lifetime_fitPython analysis script: fastFLIM (2024)[Non-textual form › Software]. GitHub. Molenaar, R.https://github.com/RobertMolenaar-UT/fastFLIMSurgical navigation for targeted retroperitoneal lymph-node removal: a randomised, controlled, phase 3 trial (2024)EClinicalMedicine, 74. Article 102754. Groen, H. C., Wit, E. M. K., Heerink, W. J., Kuhlmann, K. F. D., Nijkamp, J. A., van Veen, R., Schoots, I. G., Balduzzi, S., Zijlmans, H. J. M. A. A., van Leeuwen, P. J., van der Poel, H. G. & Ruers, T. J. M.https://doi.org/10.1016/j.eclinm.2024.102754Exploring fluorescence-based methods for detection and quantification of model viruses and nanoplastics (2024)[Thesis › PhD Thesis - Research UT, graduation UT]. University of Twente. Chatterjee, S.https://doi.org/10.3990/1.9789036561617Unifying Atoms and Colloids near the Glass Transition through Bond-Order Topology (2024)Physical review letters, 132(21). Article 218202. Stricker, L., Derlet, P. M., Demirörs, A. F., Vutukuri, H. R. & Vermant, J.https://doi.org/10.1103/PhysRevLett.132.21820214-3-3τ as a Modulator of Early α-Synuclein Multimerization and Amyloid Formation (2024)ACS chemical neuroscience, 15(9), 1926-1936. Heesink, G., van den Oetelaar, M. C. M., Semerdzhiev, S. A., Ottmann, C., Brunsveld, L., Blum, C. & Claessens, M. M. A. E.https://doi.org/10.1021/acschemneuro.4c00100A surgical navigation system to aid the ablation of vanished colorectal liver metastases (2024)British journal of surgery, 111(5). Article znae110. Olthof, K., Smit, J., Fusaglia, M., Kok, N., Ruers, T. & Kuhlmann, K.https://doi.org/10.1093/bjs/znae110Resection Ratios and Tumor Eccentricity in Breast-Conserving Surgery Specimens for Surgical Accuracy Assessment (2024)Cancers, 16(10). Article 1813. Veluponnar, D., Dashtbozorg, B., Da Silva Guimaraes, M., Vrancken Peeters, M.-J. T. F. D., de Boer, L. L. & Ruers, T. J. M.https://doi.org/10.3390/cancers16101813Margin assessment during breast conserving surgery using diffuse reflectance spectroscopy (2024)Journal of biomedical optics, 29(4). Article 045006. Veluponnar, D., de Boer, L. L., Dashtbozorg, B., Jong, L.-J. S., Geldof, F., Da Silva Guimaraes, M., Sterenborg, H. J. C. M., Vrancken-Peeters, M.-J. T. F. D., van Duijnhoven, F. & Ruers, T.https://doi.org/10.1117/1.JBO.29.4.045006Role of Shape in Particle-Lipid Membrane Interactions: From Surfing to Full Engulfment (2024)ACS nano, 18(15), 10407–10416. van der Ham, S., Agudo-Canalejo, J. & Vutukuri, H. R.https://doi.org/10.1021/acsnano.3c11106Hepatic arterial infusion pump chemotherapy combined with systemic chemotherapy for borderline resectable and unresectable colorectal liver metastases: phase II feasibility study (2024)British journal of surgery, 111(4). Krul, M. F., Kok, N. F. M., Osmani, H., Buisman, F. E., Koerkamp, B. G., Grunhagen, D. J., Verhoef, C., Mostert, B., Snaebjornsson, P., Westerink, B., Klompenhouwer, E. G., Donswijk, M. L., Ruers, T. J. M., Douma, J. A. J., van Blijderveen, N., Peter Kingham, T., D’Angelica, M. I., Kemeny, N. E., Bolhuis, K., … Kuhlmann, K. F. D.https://doi.org/10.1093/bjs/znae089Automatic hepatic tumor segmentation in intra-operative ultrasound: a supervised deep-learning approach (2024)Journal of medical imaging, 11(2). Article 024501. Natali, T., Zhylka, A., Olthof, K., Smit, J. N., Baetens, T. R., Kok, N. F. M., Kuhlmann, K. F. D., Ivashchenko, O., Ruers, T. J. M. & Fusaglia, M.https://doi.org/10.1117/1.JMI.11.2.024501Advancements in margin assessment for oncological surgery: Integrating diffuse reflectance spectroscopy and ultrasound imaging (2024)[Thesis › PhD Thesis - Research external, graduation UT]. University of Twente. Geldof, F.https://doi.org/10.3990/1.9789036559768Spatial and Spectral Reconstruction of Breast Lumpectomy Hyperspectral Images (2024)Sensors (Switzerland), 24(5). Article 1567. Jong, L. J. S., Appelman, J. G. C., Sterenborg, H. J. C. M., Ruers, T. J. M. & Dashtbozorg, B.https://doi.org/10.3390/s24051567Toward the use of diffuse reflection spectroscopy for intra-operative tissue discrimination during sarcoma surgery (2024)Journal of biomedical optics, 29(2). Article 027001. Geldof, F., Schrage, Y. M., van Houdt, W. J., Sterenborg, H. J. C. M., Dashtbozorg, B. & Ruers, T. J. M.https://doi.org/10.1117/1.JBO.29.2.027001Point Projection Mapping System for Tracking, Registering, Labeling, and Validating Optical Tissue Measurements (2024)Journal of imaging, 10(2). Article 37. Feenstra, L., van der Stel, S. D., Da Silva Guimaraes, M., Dashtbozorg, B. & Ruers, T. J. M.https://doi.org/10.3390/jimaging10020037Amyloid Scaffolds for Cartilage Tissue Regeneration (2024)[Thesis › PhD Thesis - Research UT, graduation UT]. University of Twente. van Dalen, M. C. E.https://doi.org/10.3990/1.9789036560757Photoacoustic Imaging of Colorectal Cancer in Ex-vivo Samples: A Preliminary Study (2024)In Photons Plus Ultrasound: Imaging and Sensing 2024. Article 128421B (Proceedings of SPIE; Vol. 12842). SPIE. Ghanbarzadeh-Dagheyan, A., Francis, K. J., Mooij, C., van der Stel, S., Kuniyil Ajith Singh, M. & Ruers, T.https://doi.org/10.1117/12.3002767Ultrasound guidance in navigated liver surgery: toward deep-learning enhanced compensation of deformation and organ motion (2024)International journal of computer assisted radiology and surgery, 19(1), 1-9. Smit, J. N., Kuhlmann, K. F. D., Thomson, B. R., Kok, N. F. M., Ruers, T. J. M. & Fusaglia, M.https://doi.org/10.1007/s11548-023-02942-x
2023
Disentangling Hot Carrier Decay and the Nature of Low-n to High-n Transfer Processes in Quasi-Two-Dimensional Layered Perovskites (2023)The Journal of physical chemistry C, 127(48), 23312-23322. Einhaus, L. M., Zhang, X., Zhu, K., Korterik, J. P., Molenaar, R., Askes, S. H. C., Mul, G., ten Elshof, J. E. & Huijser, A.https://doi.org/10.1021/acs.jpcc.3c05415SARS-CoV-2 N-protein induces the formation of composite α-synuclein/N-protein fibrils that transform into a strain of α-synuclein fibrils (2023)Nanoscale, 15(45), 18337-18346. Semerdzhiev, S. A., Segers-Nolten, I., van der Schoot, P., Blum, C. & Claessens, M. M. A. E.https://doi.org/10.1039/d3nr03556eTumor Segmentation in Colorectal Ultrasound Images Using an Ensemble Transfer Learning Model: Towards Intra-Operative Margin Assessment (2023)Diagnostics, 13(23). Article 3595. Geldof, F., Pruijssers, C. W. A., Jong, L. J. S., Veluponnar, D., Ruers, T. J. M. & Dashtbozorg, B.https://doi.org/10.3390/diagnostics13233595A colloidal viewpoint on the sausage catastrophe and the finite sphere packing problem (2023)Nature communications, 14(1). Article 7896. Marín-Aguilar, S., Camerin, F., van der Ham, S., Feasson, A., Vutukuri, H. R. & Dijkstra, M.https://doi.org/10.1038/s41467-023-43722-0Nile Red staining for nanoplastic quantification: Overcoming the challenge of false positive counts due to fluorescent aggregates (2023)Environmental Challenges, 13. Article 100744. Chatterjee, S., Krolis, E., Molenaar, R., Claessens, M. M. A. E. & Blum, C.https://doi.org/10.1016/j.envc.2023.100744Clinical implementation of surgical liver navigation: Advancing ultrasound-guided techniques (2023)[Thesis › PhD Thesis - Research external, graduation UT]. University of Twente. Smit, J. N.https://doi.org/10.3990/1.9789036558402Neuroepigenetics of ageing and neurodegeneration-associated dementia: An updated review (2023)Ageing Research Reviews, 91. Article 102067. Mir, F. A., Amanullah, A., Jain, B. P., Hyderi, Z. & Gautam, A.https://doi.org/10.1016/j.arr.2023.102067An improved camera model for oblique-viewing laparoscopes: high reprojection accuracy independent of telescope rotation (2023)Physics in medicine and biology, 68(18). Article 185007. Eppenga, R., Snaauw, G., Kuhlmann, K., van der Heijden, F., Ruers, T. & Nijkamp, J.https://doi.org/10.1088/1361-6560/acf08fSize and depth of residual tumor after neoadjuvant chemoradiotherapy in rectal cancer – implications for the development of new imaging modalities for response assessment (2023)Frontiers in oncology, 13. Article 1209732. van der Stel, S. D., van den Berg, J. G., Snaebjornsson, P., Seignette, I. M., Witteveen, M., Grotenhuis, B. A., Beets, G. L., Post, A. L. & Ruers, T. J. M.https://doi.org/10.3389/fonc.2023.1209732Feasibility of tracked ultrasound registration for pelvic–abdominal tumor navigation: a patient study (2023)International journal of computer assisted radiology and surgery, 18(9), 1725-1734. Hiep, M. A. J., Heerink, W. J., Groen, H. C. & Ruers, T. J. M.https://doi.org/10.1007/s11548-023-02937-8Exploring Intra- and Inter-Regional Interactions in the IDP α-Synuclein Using smFRET and MD Simulations (2023)Biomacromolecules, 24(8), 3680-3688. Heesink, G., Marseille, M. J., Fakhree, M. A. A., Driver, M. D., van Leijenhorst-Groener, K. A., Onck, P. R., Blum, C. & Claessens, M. M. A. E.https://doi.org/10.1021/acs.biomac.3c00404Diffuse reflectance spectroscopy for accurate margin assessment in breast-conserving surgeries: importance of an optimal number of fibers (2023)Biomedical optics express, 14(8), 4017-4036. Veluponnar, D., Dashtbozorg, B., Jong, L. J. S., Geldof, F., Da Silva Guimaraes, M., Vrancken Peeters, M. J. T. F. D., van Duijnhoven, F., Sterenborg, H. J. C. M., Ruers, T. J. M. & de Boer, L. L.https://doi.org/10.1364/BOE.493179Choice of Protein, Not Its Amyloid-Fold, Determines the Success of Amyloid-Based Scaffolds for Cartilage Tissue Regeneration (2023)ACS Omega, 8(27), 24198-24209. Dalen, M. C. E. v., Karperien, M., Claessens, M. M. A. E. & Post, J. N.https://doi.org/10.1021/acsomega.3c00151Microcamera Visualisation System to Overcome Specular Reflections for Tissue Imaging (2023)Micromachines, 14(5). Article 1062. Niemitz, L., van der Stel, S. D., Sorensen, S., Messina, W., Sekar, S. K. V., Sterenborg, H. J. C. M., Andersson-Engels, S., Ruers, T. J. M. & Burke, R.https://doi.org/10.3390/mi14051062Tissue Classification of Breast Cancer by Hyperspectral Unmixing (2023)Cancers, 15(10). Article 2679. Jong, L. J. S., Post, A. L., Veluponnar, D., Geldof, F., Sterenborg, H. J. C. M., Ruers, T. J. M. & Dashtbozorg, B.https://doi.org/10.3390/cancers15102679Towards an image-guided navigation system for rectal cancer surgery (2023)[Thesis › PhD Thesis - Research external, graduation UT]. University of Twente. Eppenga, R. R.https://doi.org/10.3990/1.9789036555494Quantitative Seed Amplification Assay: A Proof-of-Principle Study (2023)The Journal of physical chemistry B, 127(8), 1735-1743. Vaneyck, J., Yousif, T. A., Segers-Nolten, I., Blum, C. & Claessens, M. M. A. E.https://doi.org/10.1021/acs.jpcb.2c08326Imaging Photoplethysmography for Noninvasive Anastomotic Perfusion Assessment in Intestinal Surgery (2023)Journal of Surgical Research, 283, 705-712. van der Stel, S. D., Lai, M., Groen, H. C., Witteveen, M., Kuhlmann, K. F. D., Grotenhuis, B. A., Kok, N. F. M., van Gastel, M., Hendriks, B. H. W. & Ruers, T. J. M.https://doi.org/10.1016/j.jss.2022.10.086Toward Intraoperative Margin Assessment Using a Deep Learning-Based Approach for Automatic Tumor Segmentation in Breast Lumpectomy Ultrasound Images (2023)Cancers, 15(6). Article 1652. Veluponnar, D., de Boer, L. L., Geldof, F., Jong, L. J. S., Da Silva Guimaraes, M., Vrancken Peeters, M. J. T. F. D., van Duijnhoven, F., Ruers, T. & Dashtbozorg, B.https://doi.org/10.3390/cancers15061652Diffuse reflection spectroscopy at the fingertip: design and performance of a compact side-firing probe for tissue discrimination during colorectal cancer surgery (2023)Biomedical optics express, 14(1), 128-147. Geldof, F., Witteveen, M., Sterenborg, H. J. C. M., Ruers, T. J. M. & Dashtbozorg, B.https://doi.org/10.1364/BOE.476242
2022
Biomolecular condensates can both accelerate and suppress aggregation of α-synuclein (2022)Science advances, 8(48). Article eabq6495. Lipiński, W. P., Visser, B. S., Robu, I., Fakhree, M. A. A., Lindhoud, S., Claessens, M. M. A. E. & Spruijt, E.https://doi.org/10.1126/sciadv.abq6495Image-guided navigation for locally advanced primary and locally recurrent rectal cancer: evaluation of its early cost-effectiveness (2022)BMC cancer, 22(1). Article 504. Lindenberg, M., Kramer, A., Kok, E., Retèl, V., Beets, G., Ruers, T. & van Harten, W.https://doi.org/10.1186/s12885-022-09561-wLayer thickness prediction and tissue classification in two-layered tissue structures using diffuse reflectance spectroscopy (2022)Scientific reports, 12(1). Article 1698. Geldof, F., Dashtbozorg, B., Hendriks, B. H. W., Sterenborg, H. J. C. M. & Ruers, T. J. M.https://doi.org/10.1038/s41598-022-05751-5How important is the N-terminal acetylation of alpha-synuclein for its function and aggregation into amyloids? (2022)Frontiers in Neuroscience, 16. Article 1003997. Iyer, A., Sidhu, A. & Subramaniam, V.https://doi.org/10.3389/fnins.2022.1003997Quantification of Dark Protein Populations in Fluorescent Proteins by Two-Color Coincidence Detection and Nanophotonic Manipulation (2022)The Journal of physical chemistry B, 126(40), 7906-7915. Heesink, G., Caron, C., Van Leijenhorst-Groener, K., Molenaar, R., Gadella, T. W. J., Claessens, M. M. A. E. & Blum, C.https://doi.org/10.1021/acs.jpcb.2c04627Comparison of preprocessing techniques to reduce nontissue-related variations in hyperspectral reflectance imaging (2022)Journal of biomedical optics, 27(10). Article 106003. Witteveen, M., Sterenborg, H. J. C. M., van Leeuwen, T. G., Aalders, M. C. G., Ruers, T. J. M. & Post, A. L.https://doi.org/10.1117/1.JBO.27.10.106003Plasmonic phenomena in molecular junctions: principles and applications (2022)Nature Reviews Chemistry, 6(10), 681-704. Wang, M., Wang, T., Ojambati, O. S., Duffin, T. J., Kang, K., Lee, T., Scheer, E., Xiang, D. & Nijhuis, C. A.https://doi.org/10.1038/s41570-022-00423-4Ultrasound-based navigation for open liver surgery using active liver tracking (2022)International journal of computer assisted radiology and surgery, 17(10), 1765-1773. Smit, J. N., Kuhlmann, K. F. D., Ivashchenko, O. V., Thomson, B. R., Langø, T., Kok, N. F. M., Fusaglia, M. & Ruers, T. J. M.https://doi.org/10.1007/s11548-022-02659-3Quantification of the Retention and Disassembly of Virus Particles by a PEI-Functionalized Microfiltration Membrane (2022)ACS Applied Polymer Materials, 4(7), 5173-5179. Chatterjee, S., Molenaar, R., De Vos, W. M., Roesink, H. D. W., Wagterveld, R. M., Cornelissen, J. J. L. M., Claessens, M. M. A. E. & Blum, C.https://doi.org/10.1021/acsapm.2c00560ASO Visual Abstract: Real-Time Wireless Tumor Tracking in Navigated Liver Resections-an Ex Vivo Feasibility Study (2022)Annals of surgical oncology, 29(6), 3961-3962. Eppenga, R., Heerink, W., Smit, J., Kuhlmann, K., Ruers, T. & Nijkamp, J.https://doi.org/10.1245/s10434-022-11424-4Real-Time Wireless Tumor Tracking in Navigated Liver Resections: An Ex Vivo Feasibility Study (2022)Annals of surgical oncology, 29(6), 3951-3960. Eppenga, R., Heerink, W., Smit, J., Kuhlmann, K., Ruers, T. & Nijkamp, J.https://doi.org/10.1245/s10434-022-11364-zDiscriminating healthy from tumor tissue in breast lumpectomy specimens using deep learning-based hyperspectral imaging (2022)Biomedical optics express, 13(5), 2581-2604. Jong, L. J. S., de Kruif, N., Geldof, F., Veluponnar, D., Sanders, J., Vrancken Peeters, M. J. T. F. D., van Duijnhoven, F., Sterenborg, H. J. C. M., Dashtbozorg, B. & Ruers, T. J. M.https://doi.org/10.1364/BOE.455208Imaging PPG for In Vivo Human Tissue Perfusion Assessment during Surgery (2022)Journal of imaging, 8(4). Article 94. Lai, M., van der Stel, S. D., Groen, H. C., van Gastel, M., Kuhlmann, K. F. D., Ruers, T. J. M. & Hendriks, B. H. W.https://doi.org/10.3390/jimaging8040094Applications of Polyelectrolyte Complexes for Separation Processes (2022)[Thesis › PhD Thesis - Research UT, graduation UT]. University of Twente. van Lente, J. J.https://doi.org/10.3990/1.9789036553025Optical energy on demand (2022)Nature physics, 18(3), 227-228. Ojambati, O. S.https://doi.org/10.1038/s41567-022-01509-yInteractions between SARS-CoV-2 N-Protein and α-Synuclein Accelerate Amyloid Formation (2022)ACS chemical neuroscience, 13(1), 143-150. Semerdzhiev, S. A., Fakhree, M. A. A., Segers-Nolten, I., Blum, C. & Claessens, M. M. A. E.https://doi.org/10.1021/acschemneuro.1c00666Bayesian updating for nonlinear dynamics problems using machine learning (2022)In Proceedings of ISMA 2022 - International Conference on Noise and Vibration Engineering and USD 2022 - International Conference on Uncertainty in Structural Dynamics (pp. 4934-4942). Katholieke Universiteit Leuven. van Dijk, W., Hakvoort, W. B. J. & Rosić, B. 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S.https://doi.org/10.3990/1.9789036540865Lysozyme self-assembles into amyloid networks that support cartilage tissue formation (2016)Osteoarthritis and cartilage, 24(supplement 1), S465. Article 794. van Dalen, M., Post, J., Karperien, M. & Claessens, M. M. A. E.https://doi.org/10.1016/j.joca.2016.01.848Functionally different α-synuclein inclusions yield insight into Parkinson’s disease pathology (2016)Scientific reports, 6. Article 23116. Raiss, C. C., Braun, T. S., Siemerink-Konings, I. B. M., Grabmayr, H., Hassink, G., Sidhu, A., le Feber, J., Bausch, A. R., Jansen, C., Subramaniam, V. & Claessens, M. M. A. E.https://doi.org/10.1038/srep23116Size-selective analyte detection in an integrated optical Young interferometer biosensor (2016)[Thesis › PhD Thesis - Research UT, graduation UT]. University of Twente. Mulder, H.https://doi.org/10.3990/1.9789036540292Multifaceted fibrils: self-assembly, polymorphism and functionalization (2016)[Thesis › PhD Thesis - Research UT, graduation UT]. University of Twente. Sidhu, A.https://doi.org/10.3990/1.9789036540247Real-time in vivo assessment of radiofrequency ablation of human colorectal liver metastases using diffuse reflectance spectroscopy (2016)European journal of surgical oncology, 42(2), 251-259. Tanis, E., Spliethoff, J. W., Evers, D. J., Langhout, G. C., Snaebjornsson, P., Prevoo, W., Hendriks, B. H. W. & Ruers, T. J. M.https://doi.org/10.1016/j.ejso.2015.12.005photoacoustic staging of nodal metastases using spios: comparison between in vivi, in toto and ex vivo imaging in a rat model (2016)Biomedical spectroscopy and imaging, 5(1), 71-87. Grootendorst, D. J., Fratila, R. M., Pouw, J., ten Haken, B., van Wezel, R. J. A., Rottenberg, S., Steenbergen, W., Manohar, S. & Ruers, T. J. M.https://doi.org/10.3233/BSI-150127Accumulation of small protein molecules in a macroscopic complex coacervate (2016)Soft matter, 12, 408-413. Lindhoud, S. & Claessens, M. M. A. E.https://doi.org/10.1039/c5sm02386fChip based common-path optical coherence tomography system with an on-chip microlens and multi-reference suppresion algorithm (2016)Optics express, 24(12), -. Article 12635. Chang, L., Weiss, N., van Leeuwen, T., Pollnau, M., de Ridder, R. M., Worhoff, K., Subramaniam, V. & Kanger, J. S.https://doi.org/10.1364/OE.24.012635Conformational Compatibility Is Essential for Heterologous Aggregation of α-Synuclein (2016)ACS chemical neuroscience, 7(6), 719-727. Sidhu, A., Segers-Nolten, I. M. J. & Subramaniam, V.https://doi.org/10.1021/acschemneuro.5b00322In vivo characterization of colorectal metastases in human liver using diffuse reflectance spectroscopy: toward guidance in oncological procedures (2016)Journal of biomedical optics, 21(9). Article 097004. Spliethoff, J. W., de Boer, L. L., Meier, M. A. J., Prevoo, W., de Jong, J., Kuhlmann, K., Bydlon, T. M., Sterenborg, H. J. C. M., Hendriks, B. H. W. & Ruers, T. J. M.https://doi.org/10.1117/1.JBO.21.9.097004In vivo tumor identification of colorectal liver metastases with diffuse reflectance and fluorescence spectroscopy (2016)Lasers in surgery and medicine, 48(9), 820-827. Tanis, E., Evers, D. J., Spliethoff, J. W., Pully, V. V., Kuhlmann, K., van Coevorden, F., Hendriks, B. H. W., Sanders, J., Prevoo, W. & Ruers, T. J. M.https://doi.org/10.1002/lsm.22581Intracellular Manipulation of Phagosomal Transport and Maturation Using Magnetic Tweezers (2016)In Phagocytosis and Phagosomes: Methods and Protocols (pp. 93-112). Humana Press. Shekhar, S., Subramaniam, V. & Kanger, J. S.https://doi.org/10.1007/978-1-4939-6581-6_7Low-dose CT angiography of the abdominal aorta and reduced contrast medium volume: Assessment of image quality and radiation dose (2016)Clinical Radiology, 71(1), 64-73. Nijhof, W. H., Baltussen, E. J. M., Kant, I. M. J., Jager, G. J., Slump, C. H. & Rutten, M. J. C. M.https://doi.org/10.1016/j.crad.2015.10.007Monitoring the Switching of Single BSA-ATTO 488 Molecules Covalently End-Attached to a pH-Responsive PAA Brush (2016)Langmuir, 32(35), 8803-8811. Akkilic, N., Molenaar, R., Claessens, M. M. A. E., Blum, C. & de Vos, W. M.https://doi.org/10.1021/acs.langmuir.6b01064Size-selective analyte detection with a Young Interferometer sensor using multiple wavelenghts (2016)Optics express, 24(8), 8594-8619. Mulder, H., Blum, C., Subramaniam, V. & Kanger, J. S.https://doi.org/10.1364/OE.24.008594The Impact of N-terminal Acetylation of alpha-Synuclein on Phospholipid Membrane Binding and Fibril Structure (2016)Journal of biological chemistry, 291(40), 21110-21122. Iyer, A. S., Roeters, S. J., Schilderink, N., Hommersom, B., Heeren, R. M. A., Woutersen, S., Claessens, M. M. A. E. & Subramaniam, V.https://doi.org/10.1074/jbc.M116.726612The number of α-synuclein proteins per vesicle gives insights into its physiological function (2016)[Contribution to conference › Poster] Annual Dutch Meeting on Molecular and Cellular Biophysics, Dutch Biophysics 2016. Abolghassemi Fakhree, M. A., Blum, C. & Claessens, M. M. A. E.The number of α-synuclein proteins per vesicle gives insights into its physiological function (2016)Scientific reports, 6(30658). Article 30658. Abolghassemi Fakhree, M. A., Zijlstra, N., Raiss, C. C., Siero, R., Grabmayr, H., Bausch, A. R., Blum, C. & Claessens, M. M. A. E.https://doi.org/10.1038/srep30658α-Synuclein Oligomers Stabilize Pre-Existing Defects in Supported Bilayers and Propagate Membrane Damage in a Fractal-Like Pattern (2016)Langmuir, 32(45), 11827-11836. Chaudhary, H., Iyer, A. S., Subramaniam, V. & Claessens, M. M. A. E.https://doi.org/10.1021/acs.langmuir.6b02572
2015
Learning curve and interobserver variance in quantification of the optical coherence tomography attenuation coefficient (2015)Journal of biomedical optics, 20(12). Article 121313. Wessels, R., de Bruin, D. M., Faber, D. J., Sanders, J., Vincent, A. D., van Beurden, M., van Leeuwen, T. G. & Ruers, T. J. M.https://doi.org/10.1117/1.JBO.20.12.121313Studying the blood-brain barrier on a microfluidic chip (2015)[Contribution to conference › Abstract] In Vitro Toxicology Society Annual Meeting. van der Helm, M. W., Broersen, K., van der Meer, A. D., Eijkel, J. C. T., van den Berg, A. & Segerink, L. I.https://doi.org/10.1089/aivt.2015.29000.abstractsSupporting data of spatiotemporal proliferation of human stromal cells adjusts to nutrient availability and leads to stanniocalcin-1 expression in vitro and in vivo (2015)Data in brief, 5, 84-94. Higuera Sierra, G., Fernandes, H., Spitters, T., van de Peppel, J., Auffermann, N., Truckenmüller, R., Escalante, M., Stoop, R., van Leeuwen, J. P., de Boer, J., Subramaniam, V., Karperien, M., van Blitterswijk, C., van Boxtel, A. & Moroni, L.https://doi.org/10.1016/j.dib.2015.08.012Spectral tissue sensing for guidance and monitoring in oncological procedures (2015)[Thesis › PhD Thesis - Research external, graduation UT]. University of Twente. Spliethoff, J. W.https://doi.org/10.3990/1.9789462599024Studying the blood-brain barrier on a microfluidic chip for drug development, pathology and toxicology (2015)[Contribution to conference › Poster] Annual meeting of In Vitro Toxicological Society. van der Helm, M. W., Broersen, K., van der Meer, A. D., Eijkel, J. C. T., van den Berg, A. & Segerink, L. I.Parkinson's protein α-synuclein binds efficiently and with a novel conformation to two natural membrane mimics (2015)PLoS ONE, 10(11). Article e0142795. Kumar, P., Segers-Nolten, I. M. J., Schilderink, N., Subramaniam, V. & Huber, M.https://doi.org/10.1371/journal.pone.0142795The contribution of capping layer dielectric properties to nanoparticle stability (2015)Colloids and surfaces A: Physicochemical and engineering aspects, 483, 239-247. Galanis, J., Sood, A., Gill, R. & Harries, D.https://doi.org/10.1016/j.colsurfa.2015.05.015Mechanisms of membrane disruption by alpha-synuclein aggregates (2015)[Thesis › PhD Thesis - Research UT, graduation UT]. University of Twente. Chaudhary, H.https://doi.org/10.3990/1.9789036539708How can size-selectivity be added to an integrated Young interferometer biosensor? (2015)[Contribution to conference › Poster] NanoCity 2015. Mulder, H., Subramaniam, V. & Kanger, J. S.Structural and immunogenic characterization of differently organized bovine Beta-lactoglobulin aggregates (2015)[Contribution to conference › Poster] 9th NIZO Dairy Conference. Verhoek, I., Teodorowicz, G., Wichers, H. & Broersen, K.Characterization of insulin-degrading enzyme-mediated cleavage of Abeta in distinct aggregation stages (2015)[Contribution to conference › Poster] Annual Dutch Meeting on Molecular and Cellular Biophysics, Dutch BioPhysics 2015. Hubin, E., Cioffi, F., Rozenski, J., van Nuland, N. & Broersen, K.Differentiation of healthy and malignant tissue in colon cancer patients using optical spectroscopy: A tool for image-guided surgery (2015)Lasers in surgery and medicine, 47(7), 559-565. Langhout, G. C., Spliethoff, J. W., Schmitz, S. J., Aalbers, A. G. J., van Velthuysen, M. L. F., Hendriks, B. H. W., Ruers, T. J. M. & Kuhlmann, K. F. D.https://doi.org/10.1002/lsm.22388Fat/water ratios measured with diffuse reflectance spectroscopy to detect breast tumor boundaries (2015)Breast cancer research and treatment, 152(3), 509-518. de Boer, L. L., Molenkamp, B. G., Bydlon, T. M., Hendriks, B. H. W., Wesseling, J., Sterenborg, H. J. C. M. & Ruers, T. J. M.https://doi.org/10.1007/s10549-015-3487-zPhotonic effects on the fluorescence lifetimes of dyes in thin PVA layers (2015)In Nanoimaging and Nanospectroscopy III. Article 95540G. SPIE. Prangsma, J. C., Molenaar, R., Subramaniam, V. & Blum, C.https://doi.org/10.1117/12.2190521MicroRNA Levels as Prognostic Markers for the Differentiation Potential of Human Mesenchymal Stromal Cell Donors (2015)Stem cells and development, 24(16), 1946-1955. Georgi, N., Taipaleenmaki, H., Raiss, C. C., Groen, N., Portalska, K. J., van Blitterswijk, C., de Boer, J., Post, J. N., van Wijnen, A. J. & Karperien, M.https://doi.org/10.1089/scd.2014.0534New mimetic peptides inhibitors of Aβ aggregation: Molecular guidance for rational drug design (2015)European journal of medicinal chemistry, 95, 136-152. Barrera Guisasola, E. E., Andujar, S. A., Hubin, E., Broersen, K., Kraan, I. M., Méndez, L., Delpiccolo, C. M. L., Masman, M. F., Rodríguez, A. M. & Enriz, R. D.https://doi.org/10.1016/j.ejmech.2015.03.042Spatiotemporal proliferation of human stromal cells adjusts to nutrient availability and leads to stanniocalcin-1 expression in vitro and in vivo (2015)Biomaterials, 61, 190-202. Higuera, G. A., Fernandes, H., Spitters, T. W. G. M., van de Peppel, J., Auffermann, N., Truckenmüller, R., Escalante, M., Stoop, R., van Leeuwen, J. P., de Boer, J., Subramaniam, V., Karperien, M., van Blitterswijk, C., van Boxtel, A. & Moroni, L.https://doi.org/10.1016/j.biomaterials.2015.05.017Waveguide-coupled micro-ball lens array suitable for mass fabrication (2015)Optics express, 23(17), 22414-22423. Chang, L., Dijkstra, M., Ismail, N., Pollnau, M., de Ridder, R. M., Wörhoff, K., Subramaniam, V. & Kanger, J. S.https://doi.org/10.1364/OE.23.022414The multifactorial character of Alzheimer's disease (2015)[Contribution to conference › Poster] MIRA Institute for Biomedical Technology and Technical Medicine Day. Cioffi, F., Rodriguez, A. M., Masman, M. F., Enriz, R. D. & Broersen, K.Clinical experiences with optical coherence tomography in epithelial (pre)malignancies (2015)[Thesis › PhD Thesis - Research UT, graduation UT]. University of Twente. Wessels, R.https://doi.org/10.3990/1.9789462596818Alpha-synuclein amyloid oligomers act as multivalent nanoparticles to cause hemifusion in negatively charged vesicles (2015)Small, 11(19), 2257-2262. Stefanovic, A. N. D., Claessens, M. M. A. E., Blum, C. & Subramaniam, V.https://doi.org/10.1002/smll.201402674Insights into the function and dysfunction of α-synuclein in cells (2015)[Thesis › PhD Thesis - Research UT, graduation UT]. University of Twente. Raiss, C. C.-M. R.https://doi.org/10.3990/1.9789461089458Diffuse reflectance spectroscopy: Toward real-time quantification of steatosis in liver (2015)Transplant international, 28(4), 465-474. Evers, D. J., Westerkamp, A. C., Spliethoff, J. W., Pully, V. V., Hompes, D., Hendriks, B. H. W., Prevoo, W., van Velthuysen, M.-L. F., Porte, R. J. & Ruers, T. J. M.https://doi.org/10.1111/tri.12517Functional optical coherence tomography of pigmented lesions (2015)Journal of the European Academy of Dermatology and Venereology, 29(4), 738-744. Wessels, R., de Bruin, D. M., Relyveld, G. N., Faber, D. J., Vincent, A. D., Sanders, J., van Leeuwen, T. G. & Ruers, T. J. M.https://doi.org/10.1111/jdv.12673Nanophotonic measurement of the dark fraction in red fluorescent proteins (2015)[Contribution to conference › Abstract] Focus on Microscopy, FOM 2015. Prangsma, J. C., Molenaar, R., Subramaniam, V. & Blum, C.Direct patterning of nanoparticles and biomolecules by liquid nanodispensing (2015)Nanoscale, 7(10), 4497-4504. Fabié, L., Agostini, P., Stopel, M., Blum, C., Lassagne, B., Subramaniam, V. & Ondarçuhu, T.https://doi.org/10.1039/c4nr06824fDisease related point mutations and solution conditions determine fibrillization behavior of alpha-synuclein (2015)[Contribution to conference › Poster] 59th Annual Biophysical Society Meeting. Sidhu, A., Segers-Nolten, G. M. J. & Subramaniam, V.Non-invasive imaging through opaque scattering layers (2015)In Adaptive Optics and Wavefront Control for Biological Systems (pp. 1-7) (Proceedings of SPIE; Vol. 9335). SPIE. Bertolotti, J., van Putten, E. G., Blum, C., Lagendijk, A., Vos, W. L. & Mosk, A. P.https://doi.org/10.1117/12.2079525Fibril breaking accelerates α-synuclein fibrillization (2015)The Journal of physical chemistry B, 119(5), 1912-1918. Shvadchak, V. V., Claessens, M. M. A. E. & Subramaniam, V.https://doi.org/10.1021/jp5111604Enhancing spectral shifts of plasmon-coupled noble metal nanoparticles for sensing applications (2015)Physical chemistry chemical physics, 17(1), 422-427. Göeken, K. L., Subramaniam, V. & Gill, R.https://doi.org/10.1039/c4cp03739aFluorescence Methods for Unraveling Oligomeric Amyloid Intermediates (2015)In Protein Amyloid Aggregation: Methods and Protocols (pp. 151-169) (Methods in Molecular Biology). Springer. Zijlstra, N., Schilderink, N. & Subramaniam, V.https://doi.org/10.1007/978-1-4939-2978-8_10Integrated polymer micro-ball lenses for two-dimensional divergence reduction of light from single-mode optical waveguides (2015)In European Conference on Lasers and Electro-Optics, CLEO 2015. Article 131528. Optical Society of America. Chang, L., Dijkstra, M., de Ridder, R. M., Worhoff, K., Subramaniam, V. & Kanger, J. S.Microcantilever based distance control between a probe and a surface (2015)Review of scientific instruments, 86(063706). Article 063706. Molenaar, R., Prangsma, J., van der Werf, K., Bennink, M. L., Blum, C. & Subramaniam, V.https://doi.org/10.1063/1.4922885Oligomers of Parkinson's Disease-Related α-Synuclein Mutants have Similar Structures but Distinctive Membrane Permeabilization Properties (2015)Biochemistry (USA), 54, 3142-3150. Stefanovic, A. N. D., Lindhoud, S., Semerdzhiev, S. A., Claessens, M. M. A. E. & Subramaniam, V.https://doi.org/10.1021/bi501369kOptical coherence tomography accurately identifies patients with penile (pre) malignant lesions: A single center prospective study (2015)Urology Annals, 7(4), 459-465. Wessels, R., de Bruin, D. M., Faber, D. J., Horenblas, S., Van Rhijn, B. W. G., Vincent, A. D., van Beurden, M., Van Leeuwen, T. G. & Ruers, T. J. M.https://doi.org/10.4103/0974-7796.156147Studying the blood-brain barrier on a microfluidic chip (2015)[Contribution to conference › Paper] In Vitro Toxicology Society Annual Meeting. McKim, J. M., van der Helm, M. W., Broersen, K., van der Meer, A. D., Eijkel, J. C. T., van den Berg, A. & Segerink, L. I.https://doi.org/10.1089/aivt.2015.29000.abstractsThe value of optical coherence tomography in determining surgical margins in squamous cell carcinoma of the vulva: A single-center prospective study (2015)International journal of gynecological cancer, 25(1), 112-118. Wessels, R., van Beurden, M., de Bruin, D. M., Faber, D. J., Vincent, A. D., Sanders, J., van Leeuwen, T. G. & Ruers, T. J. M.https://doi.org/10.1097/IGC.0000000000000310Three Long-Range Distance Constraints and an Approach Towards a Model for the α-Synuclein-Fibril Fold (2015)Applied Magnetic Resonance, 46(4), 369-388. Hashemi Shabestari, M., Kumar, P., Segers-Nolten, I. M. J., Claessens, M. M. A. E., van Rooijen, B. D., Subramaniam, V. & Huber, M.https://doi.org/10.1007/s00723-014-0622-7Two distinct ß-sheet structures in Italian-mutant amyloid-beta fibrils: a potential link to different clinical phenotypes (2015)Cellular and Molecular Life Sciences, 72(24), 4899-4913. Hubin, E., Deroo, S., Schierle, G. K., Kaminski, C., Serpell, L., Subramaniam, V., Van Nuland, N., Broersen, K., Raussens, V. & Sarroukh, R.https://doi.org/10.1007/s00018-015-1983-2
2014
Alpha-synuclein binds to the inner membrane of mitochondria in an a-helical conformation (2014)ChemBioChem, 15(17), 2499-2502. Robotta, M., Gerding, H. R., Vogel, A., Hauser, K., Schildknecht, S., Karreman, C., Leist, M., Subramaniam, V. & Drescher, M.https://doi.org/10.1002/cbic.201402281Diffraction limited intracellular alpha-synuclein clusters colocalize with cellular membranes (2014)[Contribution to conference › Poster] CHAINS 2014. Abolghassemi Fakhree, M. A., Raiss, C. C., Zijlstra, N., Kole, J., Blum, C. & Claessens, M. M. A. E.Insights into alpha-synuclein oligomer interactions with model membranes (2014)[Thesis › PhD Thesis - Research UT, graduation UT]. University of Twente. Stefanović, A.https://doi.org/10.3990/1.9789036537711Functionalizing amyloid fibrils to create hybrid metal-protein bionanostructures (2014)[Contribution to conference › Poster] NanoCity 2014. Sidhu, A., Segers-Nolten, G. M. J. & Subramaniam, V.Size-selective Detection in an Integrated Optical Young Interferometer Biosensor (2014)[Contribution to conference › Poster] NanoCity 2014. Mulder, H., Subramaniam, V. & Kanger, J. S.Influence of genetic variability and external regulating factors on amyloid-beta peptide aggregation (2014)[Thesis › PhD Thesis - Research UT, graduation UT]. University of Twente. Hubin, E.https://doi.org/10.3990/1.9789036537643Parkinson's disease in the spotlight: unraveling nanoscale α-Synuclein oligomers using ultrasensitive single-molecule spectroscopy (2014)[Thesis › PhD Thesis - Research UT, graduation UT]. University of Twente. Zijlstra, N.https://doi.org/10.3990/1.9789036537483Optical sensing for tissue differentiation (2014)[Thesis › PhD Thesis - Research external, graduation UT]. University of Twente. Evers, D. J.https://doi.org/10.3990/1.9789462593084New mimetic peptide inhibitors of Abeta-aggregation. Molecular guidance for rational drug design (2014)[Contribution to conference › Poster] Congress of the World Association of Theoretical and Computational Chemists WATOC 2014. Barrera, E., Salcedo, R., Hubin, E., Broersen, K., Andujar, S. & Rodriguez, E. R.Functionalizing amyloid fibrils to create hybrid metal-protein bionanostructures (2014)[Contribution to conference › Poster] 5th Scandinavian Symposium on Amyloid Diseases and Amyloid Mechanisms. Sidhu, A., Segers-Nolten, G. M. J. & Subramaniam, V.Diffraction limited intracellular alpha-synuclein clusters colocalize with cellular membranes (2014)[Contribution to conference › Poster] Annual Dutch Meeting on Molecular and Cellular Biophysics, Dutch Biophysics 2014. Abolghassemi Fakhree, M. A., Raiss, C. C., Zijlstra, N., Kole, N., Blum, C. & Claessens, M. M. A. E.Multimodal spectroscopy of single fluorescent nanoprobes: photophysics and characterization (2014)[Thesis › PhD Thesis - Research UT, graduation UT]. University of Twente. Stopel, M. H. W.https://doi.org/10.3990/1.9789036537537Development of an Integrated OPtical chip for Optical Coherence Tomography (2014)[Contribution to conference › Poster] MESA+ Meeting 2014. Chang, L., Dijkstra, M., de Ridder, R. M., Worhoff, K., Subramaniam, V. & Kanger, J. S.Diffraction limited intracellular alpha-synuclein clusters colocalize with cellular membranes (2014)[Contribution to conference › Poster] MESA+ Meeting 2014. Abolghassemi Fakhree, M. A., Raiss, C. C., Zijlstra, N., Kole, J., Blum, C. & Claessens, M. M. A. E.Alzheimer's disease and cerebral amyloid angiopathy, doppelgangers? (2014)[Contribution to conference › Abstract] The 28th Annual Symposium of The Protein Society. Sarroukh, R., Hubin, E., Serpell, L. C., van Nuland, N., Broersen, K. & Raussens, V.https://doi.org/10.1002/pro.2504Background reduction in a young interferometer biosensor (2014)In Optical Sensors, 2014. Article 107778. Optical Society of America. Mulder, H. K. P., Subramaniam, V. & Kanger, J. S.Coming to grips with amyloid oligomers: Single molecule photobleaching approaches (2014)In Optical Sensors, 2014. Article 107778. Optical Society of America. Subramaniam, V.Nanophotonic measurement of the dark fraction in red fluorescent proteins (2014)In European Conference on Lasers and Electro-Optics, CLEO 2015. Optical Society of America. Prangsma, J. C., Molenaar, R., Subramaniam, V. & Blum, C.Single-molecule tracking tools to study plasma membrane receptor dynamics: applications to EGF receptor (2014)[Thesis › PhD Thesis - Research UT, graduation UT]. University of Twente. Bosch, P. J.https://doi.org/10.3990/1.9789036536943Photosynthesis in a different light: Spectro-microscopy for in vivo characterization of chloroplasts (2014)Frontiers in Plant Science, 5(JUN). Article 292. Peter, S., Zell, M. B., Blum, C., Stuhl, A., Elgass, K., Sackrow, M., Subramaniam, V., Meixner, A. J., Harter, K., Maurino, V. G. & Schleifenbaum, F. E.https://doi.org/10.3389/fpls.2014.00292Intra-laser-cavity sensing with a dual-wavelength distributed-feedback laser (2014)In 17th European Conference on Integrated Optics (pp. Paper We4bR4). Article Paper We4bR4. CNRS - University Nice Sophia Antipolis. Bernhardi, E., van der Werf, K., Hollink, A., Worhoff, K., Subramaniam, V. & Pollnau, M.http://eprints.eemcs.utwente.nl/secure2/24840/01/ECIO14_Bernhardi.pdfLocalized surface plasmon resonance coupling based sensing for pathogen detection (2014)[Contribution to conference › Poster] 24th Anniversary World Congress on Biosensors, Biosensors 2014. Göeken, K., de Vreede, L., Eijkel, J., Gill, R. & Subramaniam, V.Protein fibrils as scaffold material for cartilage tissue engineering - effects on cell viability and proliferation (2014)[Contribution to conference › Abstract] 2014 OARSI World Congress on Osteoarthritis. van Dalen, M. C. E., Karperien, H. B. J., Subramaniam, V., Claessens, M. M. A. E. & Post, J. N.Optical biopsy of epithelial cancers by optical coherence tomography (2014)Lasers in medical science, 29(3), 1297-1305. Wessels, R., de Bruin, D. M., Faber, D. J., van Leeuwen, T. G., van Beurden, M. F. B. & Ruers, T. J. M.https://doi.org/10.1007/s10103-013-1291-8The Formation of Higher Order Structures by the Neuronal Protein Alpha-Synuclein: Self-Assembly Over Multiple Length Scales (2014)Biophysical journal, 106(2, Suppl. 1), 683a-684a. Semerdzhiev, S. A., Claessens, M. M. A. E. & Subramaniam, V.https://doi.org/10.1016/j.bpj.2013.11.3783Association of α-Synuclein with Lipid Vesicles. Stopped-Flow Kinetics of Concerted Binding and Conformational Change (2014)Biophysical journal, 106(2, Suppl. 1), 248a-248a. Jovin, T. M., Shvadchak, V., Siero, R., Falomir-Lockhart, L. J. & Subramaniam, V.https://doi.org/10.1016/j.bpj.2013.11.1453How Do Lipids Localize in Lewy Bodies? (2014)Biophysical journal, 106(2, Suppl. 1), 301a-301a. Chaudhary, H., Subramaniam, V. & Claessens, M. M. A. E.https://doi.org/10.1016/j.bpj.2013.11.1749Long-Range Distance Constraints for the Fibril Fold of Parkinson's Protein Alpha-Synuclein (2014)Biophysical journal, 106(2, Suppl. 1), 269a-269a. Shabestari, M. H., Kumar, P., Segers-Nolten, I. M. J., Claessens, M. M. A. E., van Rooijen, B. D., Subramaniam, V. & Huber, M.https://doi.org/10.1016/j.bpj.2013.11.1576Repeats in the α-Synuclein Sequence Determine its Conformation on Membranes and Influence Aggregation Properties (2014)Biophysical journal, 106(2, Suppl. 1), 268a-268a. Shvadchak, V. & Subramaniam, V.https://doi.org/10.1016/j.bpj.2013.11.1574Using magnetic probes to study receptor clustering in live cells (2014)Biophysical journal, 106(2, Suppl. 1), 20a-20a. Celikkol, B., Cambi, A., Figdor, C., Subramaniam, V. & Kanger, J. S.https://doi.org/10.1016/j.bpj.2013.11.164Toward efficient modification of large gold nanoparticles with DNA (2014)In Colloidal Nanoparticles for Biomedical Applications IX (pp. 1-6) (SPIE proceedings; Vol. 895504). SPIE. Gill, R., Göeken, K. & Subramaniam, V.https://doi.org/10.1117/12.2037239A Four-Amino Acid Linker between Repeats in the α-Synuclein Sequence Is Important for Fibril Formation (2014)Biochemistry (USA), 53(2), 279-281. Shvadchak, V. & Subramaniam, V.https://doi.org/10.1021/bi401427tAmyloids of Alpha-Synuclein Affect the Structure and Dynamics of Supported Lipid Bilayers (2014)Biophysical journal, 106(12), 2585-2594. Iyer, A. S., Petersen, N. O., Claessens, M. M. A. E. & Subramaniam, V.https://doi.org/10.1016/j.bpj.2014.05.001Application of MALDI-TOF mass spectrometry for study on fibrillar and oligomeric aggregates of alpha-synuclein (2014)Biopolymers and cell, 30(3), 190-196. Severinovskaya, O. V., Kovalska, V. B., Losytskyy, M. Y., Cherepanov, V. V., Subramaniam, V. & Yarmoluk, S. M.https://doi.org/10.7124/bc.000895Characterization of Sierpinski carpet optical antenna at visible and near-infrared wavelengths (2014)New journal of physics, 16. Article 093024. Chen, T. L., Dikken, D. J., Prangsma, J. C., Segerink, F. & Herek, J. L.https://doi.org/10.1088/1367-2630/16/9/093024Characterizing nanoscale morphologic and mechanical properties of α-synuclein amyloid fibrils with atomic force microscopy (2014)In Bio-nanoimaging : protein misfolding and aggregation (pp. 309-322). Elsevier. Sweers, K. K. M., Stöckl, M. T., Bennink, M. L. & Subramaniam, V.https://doi.org/10.1016/B978-0-12-394431-3.00029-8Classification of dynamical diffusion states in single molecule tracking microscopy (2014)Biophysical journal, 107(3), 588-598. Bosch, P. J., Kanger, J. S. & Subramaniam, V.https://doi.org/10.1016/j.bpj.2014.05.049Detection of Melanoma Metastases in Resected Human Lymph Nodes by Noninvasive Multispectral Photoacoustic Imaging (2014)International Journal of Biomedical Imaging, 2014. Article 163652. Langhout, G. C., Grootendorst, D., Nieweg, O. E., Wilhelmus, M., Wouters, J. M., van der Hage, J. A., Jose, J., van Boven, H., Steenbergen, W., Manohar, S. & Ruers, T. J. M.https://doi.org/10.1155/2014/163652Dynamic coupling of ALCAM to the actin cortex strengthens cell adhesion to CD6 (2014)Journal of cell science, 127(7), 1595-1606. te Riet, J., Helenius, J., Strohmeyer, N., Cambi, A., Figdor, C. & Müller, D. J.https://doi.org/10.1242/jcs.141077Elucidating the Aggregation Number of Dopamine-Induced alpha-Synuclein Oligomeric Assemblies (2014)Biophysical journal, 106(2), 440-446. Zijlstra, N., Claessens, M. M. A. E., Blum, C. & Subramaniam, V.https://doi.org/10.1016/j.bpj.2013.12.009Evaluation of fluorophores to label SNAP-tag fused proteins for multicolor single molecule tracking microsopy in live cells (2014)Biophysical journal, 107, 803-814. Bosch, P. J., Correa, I. R., Sonntag, M. H., Brunsveld, L., Kanger, J. S. & Subramaniam, V.https://doi.org/10.1016/j.bpj.2014.06.040Excitation Spectra and Stokes Shift Measurements of Single Organic Dyes at Room Temperature (2014)The journal of physical chemistry letters, 5(18), 3259-3264. Stopel, M. H. W., Blum, C. & Subramaniam, V.https://doi.org/10.1021/jz501536aLocal recurrence rates after radiofrequency ablation or resection of colorectal liver metastases: Analysis of the European Organisation for Research and Treatment of Cancer #40004 and #40983 (2014)European journal of cancer, 50(5), 912-919. Tanis, E., Nordlinger, B., Mauer, M., Sorbye, H., van Coevorden, F., Gruenberger, T. M., Schlag, P. M., Punt, C. J. A., Ledermann, J. & Ruers, T. J. M.https://doi.org/10.1016/j.ejca.2013.12.008Mechanistic insights in glycation-induced protein aggregation (2014)Biomacromolecules, 15(9), 3449-3462. Adrover, M., Marino, L., Sanchis, P., Pauwels, K., Kraan, Y. M., Lebrun, P., Vilanova, B., Munoz, F., Broersen, K. & Donoso, J.https://doi.org/10.1021/bm501077jMembrane interactions and fibrillization of alpha-synuclein play an essential role in membrane disruption (2014)FEBS letters, 588, 4457-4463. Chaudhary, H., Stefanovic, A. N. D., Subramaniam, V. & Claessens, M. M. A. E.https://doi.org/10.1016/j.febslet.2014.10.016Microdomains in the membrane landscape shape antigen-presenting cell function (2014)Journal of leukocyte biology, 95(2), 251-263. Zuidscherwoude, M., de Winde, C. M., Cambi, A. & van Spriel, A. B.https://doi.org/10.1189/jlb.0813440Monitoring of tumor radio frequency ablation using derivative spectroscopy (2014)Journal of biomedical optics, 19(9). Article 97004. Spliethoff, J. W., Tanis, E., Evers, D. J., Hendriks, B. H. W., Prevoo, W. & Ruers, T. J. M.https://doi.org/10.1117/1.JBO.19.9.097004Monitoring of tumor response to Cisplatin using optical spectroscopy (2014)Translational oncology, 7(2), 230-239. Spliethoff, J. W., Evers, D. J., Jaspers, J. E., Hendriks, B. H. W., Rottenberg, S. & Ruers, T. J. M.https://doi.org/10.1016/j.tranon.2014.02.009Multimodal fluorescence imaging spectroscopy (2014)In Fluorescence Spectroscopy and Microscopy: Methods and Protocols (pp. 521-536) (Methods in Molecular Biology ; Vol. 1076). Humana Press. Stopel, M. H. W., Blum, C. & Subramaniam, V.https://doi.org/10.1007/978-1-62703-649-8_23Nanoparticle Aggregate-Based Fluorescence Enhancement for Highly Sensitive and Reproducible Detection of DNA (2014)Particle & particle systems characterization, 31(9), 943-947. Annink, C. & Gill, R.https://doi.org/10.1002/ppsc.201400061Plasticity of the MAPK signaling network in response to mechanical stress (2014)PLoS ONE, 9(7), -. Article e101963. Pereira, A. M., Tudor, C., Pouille, P.-A., Shekhar, S., Kanger, J. S., Subramaniam, V. & Martin-Blanco, E.https://doi.org/10.1371/journal.pone.0101963Podosomes of dendritic cells facilitate antigen sampling (2014)Journal of cell science, 127(5), 1052-1064. Baranov, M. V., ter Beest, M., Reinieren-Beeren, I., Cambi, A., Figdor, C. & van den Bogaart, G.https://doi.org/10.1242/jcs.141226Predicting the Loading of Virus-Like Particles with Fluorescent Proteins (2014)Biomacromolecules, 15(2), 558-563. Rurup, W. F., Verbij, F., Koay, M. S. T., Blum, C., Subramaniam, V. & Cornelissen, J. J. L. M.https://doi.org/10.1021/bm4015792Priming by Chemokines Restricts Lateral Mobility of the Adhesion Receptor LFA-1 and Restores Adhesion to ICAM-1 Nano-Aggregates on Human Mature Dendritic Cells (2014)PLoS ONE, 9(6), -. Article e99589. Borgman, K. J., van Zanten, T. S., Manzo, C., Cabezon, R., Cambi, A., Benitez-Ribas, D. & Garcia Parajo, M. F.https://doi.org/10.1371/journal.pone.0099589Quantifying DNA on the surface of gold nanoparticles – evidence for interference of the dye when using dye-labelled DNA (2014)[Contribution to conference › Poster] Faraday Discussion on Physical Chemistry of Functionalised Biomedical Nanoparticles 2014. Göeken, K., Gill, R. & Subramaniam, V.Self-Assembly of Protein Fibrils into Suprafibrillar Aggregates: Bridging the Nano- and Mesoscale (2014)ACS nano, 8(6), 5543-5551. Semerdzhiev, S. A., Dekker, D. R., Subramaniam, V. & Claessens, M. M. A. E.https://doi.org/10.1021/nn406309cSingle-Molecule Spectroscopy (2014)In Handbook of Spectroscopy (pp. 821-876). Wiley-VCH Verlag. Schleifenbaum, F., Blum, C., Brecht, M. & Meixner, A. J.https://doi.org/10.1002/9783527654703.ch21Size-selective detection in an integrated optical Young interferometer (2014)[Contribution to conference › Poster] NanoNextNL Program 10 Theme meeting Sensors and Actuators. Mulder, H., Subramaniam, V. & Kanger, J. S.Solution conditions define morphological homogeneity of alpha-synuclein fibrils (2014)Biochimica et biophysica acta : proteins and proteomics, 1844, 2127-2134. Sidhu, A., Segers-Nolten, G. M. J. & Subramaniam, V.https://doi.org/10.1016/j.bbapap.2014.09.007Spatiotemporal organization and mechanosensory function of podosomes (2014)Cell adhesion & migration, 8(3), 268-272. van den Dries, K., Bolomini-Vittori, M. & Cambi, A.https://doi.org/10.4161/cam.28182Syntenin-1 and ezrin proteins link activated leukocyte cell adhesion molecule to the actin cytoskeleton (2014)Journal of biological chemistry, 289(19), 13445-13460. Tudor, C., te Riet, J., Eich, C., Harkes, R., Smisdom, N., Bouhuijzen Wenger, J., Ameloot, M., Holt, M., Kanger, J. S., Figdor, C., Cambi, A. & Subramaniam, V.https://doi.org/10.1074/jbc.M113.546754Transient dynamics of Abeta contribute to toxicity in Alzheimer's disease (2014)Cellular and Molecular Life Sciences, 71(18), 3507-3521. Hubin, E., van Nuland, N. A. J., Broersen, K. & Pauwels, K.https://doi.org/10.1007/s00018-014-1634-zα-Synuclein oligomers distinctively permeabilize complex model membranes (2014)The FEBS Journal, 281(12), 2838-2850. Article 12824. Stefanovic, A., Stöckl, M. T., Claessens, M. M. A. E. & Subramaniam, V.https://doi.org/10.1111/febs.12824
2013
Size-selective detection in an integrated optical Young interferometer biosensor (2013)[Contribution to conference › Poster] MicroNanoConference 2013. Mulder, H., Subramaniam, V. & Kanger, J. S.Surface modification of electrospun fibre meshes by oxygen plasma for bone regeneration (2013)Biofabrication, 5(1), -. Article 015006. Nandakumar, A., Tahmasebi Birgani, Z., Reis Santos, D., Mentink-Leusink, A., Auffermann, N., van der Werf, K., Bennink, M. L., Moroni, L., van Blitterswijk, C. & Habibovic, P.https://doi.org/10.1088/1758-5082/5/1/015006Discrimination of protein binding from bulk changes in a Young interferometer biosensor (2013)[Contribution to conference › Poster] NanoNextNL NanoMedicine 2013. Mulder, H. & Kanger, J. S.Fabrication of gold-nanoparticle arrays using photolithography and thermal dewetting (2013)In 17th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS (pp. 1418-1420) (MicroTAS). The Priniting House. de Vreede, L., Göeken, K., Gill, R., van den Berg, A. & Eijkel, J. C. T.http://eprints.eemcs.utwente.nl/secure2/24050/01/475_0420.pdfBlinking statistics of colloidal quantum dots at different excitation wavelengths (2013)RSC advances, 3(38), 17440-17445. Stopel, M. H. W., Prangsma, J. C., Blum, C. & Subramaniam, V.https://doi.org/10.1039/c3ra43637cFast, single-step, and surfactant-free oligonucleotide modification of gold nanoparticles using DNA with a positively charged tail (2013)Chemical communications, 49(97), 11400-11402. Gill, R., Göeken, K. & Subramaniam, V.https://doi.org/10.1039/c3cc47138aAntiparallel beta-sheet architecture of italian-mutant amyloid-beta fibrils (2013)[Contribution to conference › Poster] TN2 Conference on Alzheimer's disease and related disorders. Hubin, E., Sarroukh, R., de Roo, S., Raussens, V., van Nuland, N. & Broersen, K.Massive parallel characterization of resonant metal nanostructures (2013)[Contribution to conference › Poster] 37th Annual meeting NNV AMO Lunteren 2013. Mak, J., Dikken, D. J. W., Segerink, F. B., Prangsma, J. & Herek, J. L.http://www.ru.nl/amolunteren/Alpha-synuclein oligomers distinctively permeabilize model plasma and mitochondrial membranes (2013)[Contribution to conference › Poster] Annual Dutch meeting on Molecular and Cellular Biophysics 2013. Stefanovic, A., Claessens, M. M. A. E. & Subramaniam, V.Amyloid Scaffolds for Cartilage Tissue Engineering: The Effect of Amyloid Structures on Cell Viability and Proliferation (2013)[Contribution to conference › Poster] Annual Dutch meeting on Molecular and Cellular Biophysics 2013. van Dalen, M. C. E., Karperien, H. B. J., Subramaniam, V., Post, J. N. & Claessens, M. M. A. E.Hierarchical self-assembly of alpha-synuclein. The formation of higher order structures by the neuronal protein alpha-synuclein: self-assembly over multiple length scales (2013)[Contribution to conference › Poster] Annual Dutch meeting on Molecular and Cellular Biophysics 2013. Semerdzhiev, S. A., Dekker, D. R., Subramaniam, V. & Claessens, M. M. A. E.Antiparallel beta-sheet architecture of italian-mutant amyloid-beta fibrils (2013)[Contribution to conference › Poster] Spetsai Summer School on Protein Interactions, assesmblies and human disease. Hubin, E., Sarroukh, R., de Roo, S., Raussens, V., van Nuland, N. & Broersen, K.Facilities at MESA+ BioNanoLab (2013)[Contribution to conference › Poster] MESA+ Meeting 2013. Segers-Nolten, G. M. J.Optical nanoscopy to study protein aggregation: function versus toxicity (2013)[Contribution to conference › Poster] MESA+ Meeting 2013. Zijlstra, N., Raiss, C. C., Siemerink-Konings, I., Chaudhary, H., Subramaniam, V., Blum, C. & Claessens, M. M. A. E.Self-assembled amyloid nanostructures as scaffolds for creating photonic and electronic assemblies (2013)[Contribution to conference › Poster] MESA+ Meeting 2013. Sidhu, A., Segers-Nolten, G. M. J. & Subramaniam, V.Hierarchical self-assembly of alpha-synuclein (2013)[Contribution to conference › Poster] 3rd International Soft Matter Conference, ISMC 2013. Semerdzhiev, S. A., Dekker, D. R., Lindhoud, S., Subramaniam, V. & Claessens, M. M. A. E.α-Synuclein oligomers: an amyloid pore? Insights into mechanisms of alpha-synuclein oligomer-lipid interactions (2013)Molecular neurobiology, 47(2), 613-621. Stöckl, M. T., Zijlstra, N. & Subramaniam, V.https://doi.org/10.1007/s12035-012-8331-4Hierarchical self-assembly of alpha-synuclein. The formation of higher order structures by the neuronal protein alpha-synuclein: self-assembly over multiple length scales (2013)[Contribution to conference › Poster] Gordon Research Seminar on Soft Condensed Matter Physics. Semerdzhiev, S. A., Dekker, D. R., Subramaniam, V. & Claessens, M. M. A. E.Shining light on amyloid protein aggregates: Single-molecule photobleaching of sub-stoichiometrically labeled alpha-synuclein oligomers reveals the aggregation number (2013)[Contribution to conference › Poster] 9th European Biophysics Congress, EBSA 2013. Zijlstra, N., Segers-Nolten, G. M. J., Claessens, M. M. A. E., Blum, C. & Subramaniam, V.Alpha-synuclein fibrillization plays essential role in membrane disruption (2013)[Contribution to conference › Poster] 9th European Biophysics Congress, EBSA 2013. Chaudhary, H., Subramaniam, V. & Claessens, M. M. A. E.Alpha-synuclein oligomers distinctively permeabilize model plasma and mitochondrial membranes (2013)[Contribution to conference › Poster] 9th European Biophysics Congress, EBSA 2013. Stefanovic, A., Stöckl, M. T., Claessens, M. M. A. E. & Subramaniam, V.Intra-laser-cavity microparticle sensing with a dual-wavelength distributed-feedback laser (2013)Laser & photonics reviews, 7(4), 589-595. Bernhardi, E., van der Werf, K., Hollink, A., Worhoff, K., de Ridder, R. M., Subramaniam, V. & Pollnau, M.https://doi.org/10.1002/lpor.201200111Localized surface plasmon resonance based sensing for pathogen detection (2013)[Contribution to conference › Poster] FEBS: Biological surfaces and interfaces. Göeken, K., Gill, R. & Subramaniam, V.Imaging Through Scattering Media (2013)In Optics InfoBase Conference Papers 2013 (pp. P1-3). Article 104495. Optical Society of America. Bertolotti, J., van Putten, E. G., Blum, C., Lagendijk, A., Vos, W. L. & Mosk, A.http://www.scopus.com/inward/record.url?scp=84898634247&partnerID=8YFLogxKSelf assembled amyloid nanostructures as scaffold for creating photonic and electronic assemblies (2013)[Contribution to conference › Poster] Workshop on Electronically Active Interphases. Sidhu, A., Segers-Nolten, G. M. J. & Subramaniam, V.Motor failure in neurodegenerative disease (2013)[Contribution to conference › Poster] NanoNextNL Bio-Nano Theme Day 2013. Lindhoud, S. & Claessens, M. M. A. E.Using Magnetic Probes to Study Receptor Clustering (2013)[Contribution to conference › Poster] MIRA Midterm Evaluation 2013. Celikkol, B., Cambi, A., Figdor, C., Subramaniam, V. & Kanger, J. S.Intra-operative ex vivo photoacoustic nodal staging in a rat model using a clinical superparamagnetic iron oxide nanoparticle dispersion (2013)Journal of biophotonics, 6(6-7), 493-504. Grootendorst, D., Fratila, R. M., Visscher, M., ten Haken, B., van Wezel, R. J. A., Rottenberg, S., Steenbergen, W., Manohar, S. & Ruers, T. J. M.https://doi.org/10.1002/jbio.201200204Candles, Committees, and Nobility: The Future of Nanoscale Biological Sciences (2013)[Book/Report › Inaugural speech]. University of Twente. Petersen, N. O.Dimerisation states in EGF receptor family upon interactions with therapeutic drugs studied by single molecule tracking (2013)[Contribution to conference › Poster] ICREA Conference. Bosch, P. J., Kanger, J. S. & Subramaniam, V.Emission enhancement and lifetime modification of phosphorescence on silver nanoparticle aggregates (2013)Physical chemistry chemical physics, 15(38), 15734-15739. Gill, R., Tian, L., Amerongen, H. & Subramaniam, V.https://doi.org/10.1039/C3CP50407GOn-chip microparticle detection and sizing using a dual-wavelength waveguide laser (2013)[Contribution to conference › Abstract] 2013 Conference on Lasers and Electro-Optics Europe and International Quantum Electronics Conference, CLEO/Europe-IQEC 2013. Bernhardi, E., van der Werf, K., Hollink, A., Worhoff, K., de Ridder, R. M., Subramaniam, V. & Pollnau, M.http://eprints.eemcs.utwente.nl/secure2/23346/01/CLEO_2013_cl-p.9-sun_Bernhardi.pdfInsights into solvent dependent alpha-synuclein fibrillization using hi-resolution AFM (2013)[Contribution to conference › Poster] Dutch SPM Day 2013. Sidhu, A., Segers-Nolten, G. M. J. & Subramaniam, V.Detection of Lymph Node Metastases by Photoacoustic Imaging (2013)[Thesis › PhD Thesis - Research UT, graduation UT]. University of Twente. Grootendorst, D.https://doi.org/10.3990/1.9789036535106Retrieving the fluorescence quantum yield using a controlled photonic environment (2013)[Contribution to conference › Poster] Focus on Microscopy, FOM 2013. Prangsma, J. C., Meijer, L., Subramaniam, V. & Blum, C.Method for Detection of an Analyte in a Fluid Sample (2013)[Patent › Patent] (Submitted). Ymeti, A., Nederkoorn, P. H. J., Dudia, A., Kanger, J. S. & Subramaniam, V.Photoacoustic intra-operative nodal staging using clinically approved superparamagnetic iron oxide nanoparticles (2013)In Photons Plus Ultrasound : Imaging and Sensing 2013 (pp. 256) (Proceedings of SPIE; Vol. 8581). SPIE. Grootendorst, D., Fratila, R. M., Visscher, M., ten Haken, B., van Wezel, R. J. A., Steenbergen, W., Manohar, S. & Ruers, T. J. M.https://doi.org/10.1117/12.2003517Studying T-Cell Co-Receptors with Magnetic Probes (2013)[Contribution to conference › Poster] 57th Annual Biophysical Society Meeting. Celikkol, B., Cambi, A., Figdor, C., Subramaniam, V. & Kanger, J. S.Nanophotonic control of the Foerster resonance energy transfer efficiency (2013)[Contribution to conference › Poster] Physics@FOM Veldhoven 2013. Zijlstra, N., Lagendijk, A., Wubs, M., Mosk, A., Subramaniam, V., Vos, W. L. & Blum, C.Sierpinsky carpet fractal geometry for optical antennas (2013)[Contribution to conference › Poster] Physics@FOM Veldhoven 2013. Chen, T. L., Segerink, F. B., Dikken, D. J. W., Prangsma, J. & Herek, J. L.Aggregation conditions strongly influence the molecular composition of alpha-synuclein oligomers (2013)European biophysics journal, 42(Suppl. 1), S200-S200. Zijlstra, N., Blum, C. & Subramaniam, V.https://doi.org/10.1007/s00249-013-0917-xAlpha-synuclein fibrillization plays essential role in membrane disruption (2013)European biophysics journal, 42(Suppl. 1), S148-S148. Chaudhary, H., Subramaniam, V. & Claessens, M.https://doi.org/10.1007/s00249-013-0917-xAlpha-synuclein oligomers distinctively permeabilize model plasma and mitochondrial membranes (2013)European biophysics journal, 42(Suppl. 1), S156-S156. Article P-464. Stefanovic, A. N. D., Stöckl, M. T., Claessens, M. M. A. E. & Subramaniam, V.https://doi.org/10.1007/s00249-013-0917-xAu coated Ni nanowires with tuneable dimensions for biomedical applications (2013)Journal of materials chemistry. B: materials for biology and medicine, 1(44), 6129-6136. Pondman, K. M., Maijenburg, A. W., Celikkol, B., Pathan, A. A., Kishore, U. D., ten Haken, B. & ten Elshof, J. E.https://doi.org/10.1039/C3TB20808GAutomated podosome identification and characterization in fluorescence microscopy images (2013)Microscopy and microanalysis, 19(1), 180-189. Meddens, M. B. M., Rieger, B., Figdor, C., Cambi, A. & van den Dries, K.https://doi.org/10.1017/S1431927612014018Can nanophotonics control the Förster resonance energy transfer efficiency? (2013)[Contribution to conference › Paper] 2013 Conference on Lasers and Electro-Optics Europe and International Quantum Electronics Conference, CLEO/Europe-IQEC 2013. Blum, C., Zijlstra, N., Lagendijk, A., Wubs, M., Mosk, A. P., Subramaniam, V. & Vos, W. L.https://doi.org/10.1109/CLEOE-IQEC.2013.6801861Diffuse reflectance spectroscopy: towards clinical application in breast cancer (2013)Breast cancer research and treatment, 137(1), 155-165. Evers, D. J., Nachabé, R., Vrancken Peeters, M.-J., van der Hage, J. A., Oldenburg, H. S., Rutgers, E. J., Lucassen, G. W., Hendriks, B. H. W., Wesseling, J. & Ruers, T. J. M.https://doi.org/10.1007/s10549-012-2350-8Dual-color superresolution microscopy reveals nanoscale organization of mechanosensory podosomes (2013)Molecular biology of the cell, 24(13), 2112-2123. van den Dries, K., Schwartz, S. L., Byars, J., Meddens, M. B. M., Bolomini-Vittori, M., Lidke, D. S., Figdor, C., Lidke, K. A. & Cambi, A.https://doi.org/10.1091/mbc.E12-12-0856Evaluation of superparamagnetic iron oxide nanoparticles (Endorem) as a photoacoustic contrast agent for intra-operative nodal staging (2013)Contrast media & molecular imaging, 8(1), 83-91. Grootendorst, D., Jose, J., Fratila, R. M., Visscher, M., Velders, A., ten Haken, B., van Leeuwen, T., Steenbergen, W., Manohar, S. & Ruers, T. J. M.https://doi.org/10.1002/cmmi.1498Getting a grip on alpha-synuclein amyloid oligomers - single molecule approaches (2013)European biophysics journal, 42(Suppl. 1), S108-S108. Article O-277. Subramaniam, V.https://doi.org/10.1007/s00249-013-0917-xHepatic resection for metastatic melanoma in The Netherlands: survival and prognostic factors (2013)Melanoma research, 23(1), 27-32. de Ridder, J., van Walsum, M., Verhoef, C., Nagtegaal, I., de Wilt, J. & Ruers, T. J. M.https://doi.org/10.1097/CMR.0b013e32835b70c8Imaging through scattering media (2013)In Computational Optical Sensing and Imaging, COSI 2013 (Optics InfoBase Conference Papers). Optical Society of America. Bertolotti, J., Putten, E. G., Blum, C., Lagendijk, A., Vos, W. L. & Mosk, A. P.https://doi.org/10.1364/cosi.2013.cth2b.2Improved identification of peripheral lung tumors by using diffuse reflectance and fluorescence spectroscopy (2013)Lung cancer, 80(2), 165-171. Spliethoff, J. W., Evers, D. J., Klomp, H. M., van Sandick, J. W., Wouters, M. W. J. M., Nachabe, R., Lucassen, G. W., Hendriks, B. H. W., Wesseling, J. & Ruers, T. J. M.https://doi.org/10.1016/j.lungcan.2013.01.016Interplay between myosin IIA-mediated contractility and actin network integrity orchestrates podosome composition and oscillations (2013)Nature communications, 4(1412), -. Article 1412. van den Dries, K., Meddens, M. B. M., de Keijzer, S., Shekhar, S., Subramaniam, V., Figdor, C. & Cambi, A.https://doi.org/10.1038/ncomms2402Magnetic Nanoparticles as Mediators of Ligand-Free Activation of EGFR Signaling (2013)PLoS ONE, 8(7), 1-11. Article e68879. Bharde, A. A., Palankar, R., Fritsch, C., Klaver, A., Kanger, J. S., Jovin, T. M. & Arndt-jovin, D. J.https://doi.org/10.1371/journal.pone.0068879Noninvasive fluorescence imaging through strongly scattering layers (2013)[Contribution to conference › Paper] 2013 Conference on Lasers and Electro-Optics Europe and International Quantum Electronics Conference, CLEO/Europe-IQEC 2013. Bertolotti, J., Putten, E. G., Blum, C., Lagendijk, A., Vos, W. L. & Mosk, A. P.https://doi.org/10.1109/CLEOE-IQEC.2013.6801493Optical sensing for tumor detection in the liver (2013)European journal of surgical oncology, 39(1), 68-75. Evers, D. J., Nachabé, R., Hompes, D., van Coevorden, F., Lucassen, G. W., Hendriks, B. H. W., van Velthuysen, M.-L. F., Wesseling, J. & Ruers, T. J. M.https://doi.org/10.1016/j.ejso.2012.08.005Optical techniques for the intraoperative assessment of nodal status (2013)Future oncology, 9(11), 1741-1755. Grootendorst, D., Steenbergen, W., Manohar, S. & Ruers, T. J. M.https://doi.org/10.2217/fon.13.125Oriented Protein Immobilization using Covalent and Noncovalent Chemistry on a Thiol-Reactive Self-Reporting Surface (2013)Journal of the American Chemical Society, 135(8), 3104-3111. Wasserberg, D., Nicosia, C., Tromp, E. E., Subramaniam, V., Huskens, J. & Jonkheijm, P.https://doi.org/10.1021/ja3102133Relaxation Phenomena During Polyelectrolyte Complex Formation (2013)In Polyelectrolyte Complexes in the Dispersed and Solid State I: Principles and Theory (pp. 139-172) (Advances in Polymer Science; Vol. 255). Springer. Lindhoud, S. & Cohen Stuart, M. A.https://doi.org/10.1007/978-3-642-40734-5Repeats in the α-synuclein sequence determine its conformation on membranes (2013)European biophysics journal, 42(Suppl. 1), S187-S187. Shvadchak, V. V. & Subramaniam, V.https://doi.org/10.1007/s00249-013-0917-xSelection of patients for hepatic surgery of colorectal cancer liver metastasis based on genomic aberrations (2013)Annals of surgical oncology, 20(3, suppl), 560-569. Bruin, S. C., de Ronde, J. J., Wiering, B., Braaf, L. M., de Wilt, J. H. W., Vincent, A. D., van Velthuysen, M.-L. F., Ruers, T. J. M., Wessels, L. F. A. & van 't Veer, L. J.https://doi.org/10.1245/s10434-013-2985-7Shining light on amyloid protein aggregates: Single-molecule photobleaching of sub-stoichiometrically labeled α-synuclein oligomers reveals molecular composition (2013)Microscopy and analysis (E MEA edition), 2013(7), 24-24. Zijlstra, N., Segers-Nolten, I., Claessens, M., Blum, C. & Subramaniam, V.Single-molecule imaging technique to study the dynamic regulation of GPCR function at the plasma membrane (2013)Methods in enzymology, 521, 47-67. Snaar-Jagalska, B. E., Cambi, A., Schmidt, T. & de Keijzer, S.https://doi.org/10.1016/B978-0-12-391862-8.00003-XState classification of two-population dynamic diffusion systems: comparison of various analysis methods (2013)[Contribution to conference › Poster] Quantitative Bioimaging Conference. Bosch, P. J., Kanger, J. S. & Subramaniam, V.The Multiple Faces of Prostaglandin E2 G-Protein Coupled Receptor Signaling during the Dendritic Cell Life Cycle (2013)International journal of molecular sciences, 14(4), 6542-6555. de Keijzer, S., Meddens, M. B. M., Torensma, R. & Cambi, A.https://doi.org/10.3390/ijms14046542Toward fast and quantitative modification of large gold nanoparticles by thiolated DNA: scaling of nanoscale forces, kinetics, and the need for thiol reduction (2013)The Journal of physical chemistry C, 117(30), 15677-15684. Zhang, X., Gouriye, T., Göeken, K., Servos, M. R., Gill, R. & Liu, J.https://doi.org/10.1021/jp403946xVisualizing signaling nanoplatforms at a higher spatiotemporal resolution (2013)Journal of cell science, 126, 3817-3821. Cambi, A., Lakadamyali, M., Lidke, D. S. & Garcia Parajo, M. F.https://doi.org/10.1242/jcs.137901
2012
Aggregation and toxicity of amyloid-beta peptide in relation to peptide sequence variation (2012)[Thesis › PhD Thesis - Research UT, graduation UT]. University of Twente. Vandersteen, A.https://doi.org/10.3990/1.9789036534819Amyloid functionalization: assessment of self-assembly characteristics and development of novel bionanostructures (2012)[Contribution to conference › Poster] Netherlands MicroNanoConference 2012. Sidhu, A., Segers-Nolten, G. M. J. & Subramaniam, V.Photoacoustic detection of iron oxide nanoparticles in resected rat lymph nodes (2012)In Biomedical Optics, BIOMED 2012. Optical Society of America. Grootendorst, D. J., Jose, J., Fratila, R. M., Visscher, M., Velders, A. H., Haken, B. T., Van Leeuwen, T. G., Steenbergen, W., Manohar, S. & Ruers, T. J. M.https://doi.org/10.1364/BIOMED.2012.BSu3A.52Oncologie: technologie op het snijvlak (2012)[Book/Report › Inaugural speech]. University of Twente. Ruers, T. J. M.Size-Selective Detection in an Integrated Young interferometer Biosensor (2012)[Contribution to conference › Poster] Label-free technologies. Mulder, H., Ymeti, A., Dudia, A., Subramaniam, V. & Kanger, J. S.A comparative analysis of the aggregation behavior of amyloid-beta peptide variants (2012)FEBS letters, 586(23), 4088-4093. Vandersteen, A., Hubin, E., Sarroukh, R., de Baets, G., Schymkowitz, J., Rousseau, F., Subramaniam, V., Raussens, V., Wenschuh, H., Wildemann, D. & Broersen, K.https://doi.org/10.1016/j.febslet.2012.10.022Stress-strain measurements of single micro and nanoscale fibers with modified AFM cantilevers (2012)[Contribution to conference › Poster] 4th Multifrequency Conference. Bennink, M. L., van der Werf, K., Sijbrandi, N. J., Dijkstra, P. J., Feijen, J. & Subramaniam, V.Method for Detection of an Analyte in a Fluid Sample (2012)[Patent › Patent]. Ymeti, A., Nederkoorn, P. H. J., Dudia, A., Kanger, J. S. & Subramaniam, V.Amyloid functionalization: assessment of self-assembly characteristics and development of novel bionanostructures (2012)[Contribution to conference › Poster] Annual Dutch meeting on Molecular and Cellular Biophysics 2012. Sidhu, A., Segers-Nolten, G. M. J. & Subramaniam, V.Establishing the composition of α-synuclein amyloid oligomers using single-molecule photobleaching (2012)[Contribution to conference › Poster] Annual Dutch meeting on Molecular and Cellular Biophysics 2012. Zijlstra, N., Blum, C., Segers-Nolten, I., Claessens, M. & Subramaniam, V.Hierarchical self-assembly of alpha-synuclein protein (2012)[Contribution to conference › Poster] Annual Dutch meeting on Molecular and Cellular Biophysics 2012. Semerdzhiev, S. A., Dekker, D. R., Claessens, M. M. A. E. & Subramaniam, V.Local Manipulation of Receptor Aggregation States Using Magnetic Nanoparticles (2012)[Contribution to conference › Poster] EMBL-Olympus Course on Advanced Imaging Techniques 2012. Celikkol, B., Cambi, A., Figdor, C., Subramaniam, V. & Kanger, J. S.Molecular composition of sub-stoichiometrically labeled alpha-synuclein oligomers determined by single-molecule photobleaching (2012)[Contribution to conference › Poster] Annual Dutch meeting on Molecular and Cellular Biophysics 2012. Zijlstra, N., Blum, C., Segers-Nolten, G. M. J., Claessens, M. M. A. E. & Subramaniam, V.Oligomeric alpha-synuclein elicits permeability of model systems mimicking synaptic vesicles, neuronal and mitochondrial membranes (2012)[Contribution to conference › Poster] Annual Dutch meeting on Molecular and Cellular Biophysics 2012. Stefanovic, A., Stöckl, M. T., Zijlstra, N., Claessens, M. M. A. E. & Subramaniam, V.Probing a-synuclein-membrane interactions on supported lipid bilayers (2012)[Contribution to conference › Poster] Annual Dutch meeting on Molecular and Cellular Biophysics 2012. Iyer, A. S., Stöckl, M. T., Claessens, M. M. A. E. & Subramaniam, V.Single molecule tracking microscopy and analysis methods to monitor the dynamic behaviour of EGF receptors on the cell membrane (2012)[Contribution to conference › Poster] Annual Dutch meeting on Molecular and Cellular Biophysics 2012. Bosch, P. J., Kanger, J. S. & Subramaniam, V.Structural diversity of the beta-lactoglobulin fibrils (2012)[Contribution to conference › Poster] Annual Dutch meeting on Molecular and Cellular Biophysics 2012. Subramani, R., Subramaniam, V. & Bennink, M. L.The influence of natural compounds on aggregation and degradation of a-Synuclein aggregates (2012)[Contribution to conference › Poster] Annual Dutch meeting on Molecular and Cellular Biophysics 2012. Dekker, D. R., Auffermann, N., Claessens, M. M. A. E. & Subramaniam, V.The neck region of the C-type lectin DC-SIGN regulates its surface spatiotemporal organization and virus-binding capacity on antigen presenting cells (2012)Journal of biological chemistry, 287(46), 38946-38955. Manzo, C., Torreno-Pina, J. A., Joosten, B., Reinieren-Beeren, I., Gualda, E. J., Loza-Alvarez, P., Figdor, C., Garcia Parajo, M. F. & Cambi, A.https://doi.org/10.1074/jbc.M112.380121A method for spatially resolved local intracellular mechanochemical sensing and organelle manipulation (2012)Biophysical journal, 103(3), 395-404. Shekhar, S., Cambi, A., Figdor, C., Subramaniam, V. & Kanger, J. S.https://doi.org/10.1016/j.bpj.2012.06.010Size-selective detection in integrated optical interferometric biosensors (2012)Optics express, 20(19), 20934-20950. Mulder, H., Ymeti, A., Subramaniam, V. & Kanger, J. S.https://doi.org/10.1364/OE.20.020934Molecular plasticity regulates oligomerization and cytotoxicity of the multi-peptide length Abeta pool (2012)Journal of biological chemistry, 287(44), 36732-36743. Article 36732. Vandersteen, A., Masman, M. F., de Baets, G., Jonckheere, W., van der Werf, K., Marrink, S. J., Rozenski, J., Benilova, I., De Strooper, B., Subramaniam, V., Schymkowitz, J., Rousseau, F. & Broersen, K.https://doi.org/10.1074/jbc.M112.394635Photoacoustic Nodal Metastases detection in a rat model using a clinical superparamagnetic iron oxide nanoparticle dispersion (2012)[Contribution to conference › Poster] 32nd Congress of the European Society of Surgical Oncology 2012. Grootendorst, D., Fratila, R. M., Visscher, M., ten Haken, B., van Wezel, R. J. A., Steenbergen, W., Manohar, S. & Ruers, T. J. M.https://doi.org/10.1016/j.ejso.2012.06.349Alpha-synuclein oligomers elicit permeability of model systems mimicking mitochondrial membranes (2012)[Contribution to conference › Poster] MESA+ Meeting 2012. Stefanovic, A., Stöckl, M. T., Claessens, M. M. A. E. & Subramaniam, V.Method for Detection of an Analyte in a Fluid Sample (2012)[Patent › Patent]. Ymeti, A., Nederkoorn, P. H. J., Dudia, A., Kanger, J. S. & Subramaniam, V.Multi spectral photoacoustic imaging of melanoma metastasis in resected human lymph nodes (2012)[Contribution to conference › Poster] WMIC. Grootendorst, D., Langhout, G., Jose, J., Fuchs, D. A., Steenbergen, W., Manohar, S. & Ruers, T. J. M.Sensing with colors (2012)[Thesis › PhD Thesis - Research UT, graduation UT]. University of Twente. Ungureanu, F.https://doi.org/10.3990/1.9789036533980Local Manipulation of Receptor Aggregation States using Magnetic Nanoparticles (2012)[Contribution to conference › Poster] EMBO Conference on Physics of Cells: From Soft to Living Matter 2012. Celikkol, B., Cambi, A., Figdor, C., Subramaniam, V. & Kanger, J. S.Scattering gold nanoparticles: strategies for ultra sensitive DNA detection (2012)[Thesis › PhD Thesis - Research UT, graduation UT]. University of Twente. Verdoold, R.https://doi.org/10.3990/1.9789036534086Local Manipulation of Receptor Aggregation States Using Magnetic Nanoparticles (2012)[Contribution to conference › Poster] Pierre-Gilles de Gennes Advanced School on Cellular Biophysics. Celikkol, B., Cambi, A., Figdor, C., Subramaniam, V. & Kanger, J. S.Method for Detection of an Analyte in a Fluid Sample (2012)[Patent › Patent]. Ymeti, A., Nederkoorn, P. H. J., Dudia, A., Kanger, J. S. & Subramaniam, V.Multi-dimensional blinking statistics of CdSe core-shell quantum dots (2012)[Contribution to conference › Poster] Hole-burning Single Molecule Conference. Stopel, M. H. W., Blum, C. & Subramaniam, V.System for Analysis of a Fluid (2012)[Patent › Patent]. Ymeti, A., Nederkoorn, P. H. J., Kanger, J. S., Dudia, A. & Subramaniam, V.Molecular Composition of Sub-stoichiometrically Labeled alpha-Synuclein Oligomers Determined by Single-Molecule Photobleaching (2012)Angewandte Chemie (international edition), 51(35), 8821-8824. Zijlstra, N., Blum, C., Segers-Nolten, G. M. J., Claessens, M. M. A. E. & Subramaniam, V.https://doi.org/10.1002/anie.201200813Silver nanoparticles aggregates as highly efficient optical antennas for fluorescence enhancement (2012)[Contribution to conference › Poster] Noble Metal Nanoparticles: Gordon Research Conference 2012. Gill, R., Tian, L., Amerongen, H., le Ru, E. C., Somerville, W. R. C. & Subramaniam, V.Nanoscale Structural and Mechanical Properties of Alpha-Synuclein Amyloid Fibrils (2012)[Thesis › PhD Thesis - Research UT, graduation UT]. University of Twente. Sweers, K. K. M.https://doi.org/10.3990/1.9789036533485Development of a Multi-Wavelength Integrated Young Interferometer Biosensor (2012)[Contribution to conference › Poster] World Congress on Biosensors, Biosensors 2012. Mulder, H., Ymeti, A., Dudia, A., Subramaniam, V. & Kanger, J. S.Redefining circulating tumor cells by image processing (2012)[Thesis › PhD Thesis - Research UT, graduation UT]. University of Twente. Ligthart, S.https://doi.org/10.3990/1.9789036533645System for Analysis of a Fluid (2012)[Patent › Patent]. Ymeti, A., Nederkoorn, P. H. J., Kanger, J. S., Dudia, A. & Subramaniam, V.Evanescent-field intra-cavity sensing with a dual-wavelength distributed-feedback laser (2012)In Conference on Lasers and Electro-Optics: Science and Innovations (CLEO: S and I) (pp. Paper CM3B.5). Optical Society of America. Bernhardi, E., van der Werf, K., Hollink, A., Worhoff, K., de Ridder, R. M., Subramaniam, V. & Pollnau, M.http://eprints.eemcs.utwente.nl/secure2/21901/01/CLEO_2012_Bernhardi_RF_sensor.pdfPhotoacoustic metastases detection using clinically approved SPIO dispersions (2012)[Contribution to conference › Poster] Conference on Biomedical Optics, BIOMED 2012. Grootendorst, D., Jose, J., Fratila, R. M., Visscher, M., Velders, A., ten Haken, B., van Leeuwen, T., Steenbergen, W., Manohar, S. & Ruers, T. J. M.Insights into Phagosome Maturation using Magnetic Tweezers (2012)[Thesis › PhD Thesis - Research UT, graduation UT]. University of Twente. Shekhar, S.https://doi.org/1.9789036533430Effect of ApoE isoform and lipidation status on proteolytic clearance of the Amyloid-beta peptide (2012)[Contribution to conference › Poster] NVMS-BSMS International Congress on Mass Spectrometry. Hubin, E., Rozenski, J., Subramaniam, V., van Nuland, N. & Broersen, K.Shining light on amyloid protein aggregates: Establishing the composition of α-synuclein amyloid oligomers using single-molecule photobleaching (2012)[Contribution to conference › Abstract] Focus on Microscopy, FOM 2013. Zijlstra, N., Segers-Nolten, I., Claessens, M., Blum, C. & Subramaniam, V.Effect of ApoE isoform and lipidation status on proteolytic clearance of Amyloid-beta peptide (2012)[Contribution to conference › Poster] ApoE, Alzheimer's disease and Lipoprotein Biology, Keystone symposia. Hubin, E., Rozenski, J., De Strooper, B., Subramaniam, V., van Nuland, N. & Broersen, K.Establishing the molecular composition of alpha-synuclein oligomers by sub-stoichiometric labeling and single-molecule photobleaching (2012)[Contribution to conference › Poster] 56th Annual Biophysical Society Meeting 2012. Zijlstra, N., Blum, C., Segers-Nolten, G. M. J., Claessens, M. M. A. E. & Subramaniam, V.Fabrication of cell container arrays with overlaid surface topographies (2012)Biomedical microdevices, 14(1), 95-107. Truckenmüller, R. K., Giselbrecht, S., Escalante Marun, M., Groenendijk, M. N. W., Papenburg, B. J., Rivron, N. C., Unadkat, H. V., Saile, V., Subramaniam, V., van Blitterswijk, C., van den Berg, A., Wessling, M., de Boer, J. & Stamatialis, D.https://doi.org/10.1007/s10544-011-9588-5Wafer-scale thin encapsulated two-dimensional nanochannels and its application toward visualization of single molecules (2012)Journal of colloid and interface science, 367(1), 455-459. Hoang, H. T., Tong, H. D., Segers-Nolten, I. M., Tas, N. R., Subramaniam, V. & Elwenspoek, M. C.https://doi.org/10.1016/j.jcis.2011.10.001System for Analysis of a Fluid (2012)[Patent › Patent]. Ymeti, A., Nederkoorn, P. H. J., Kanger, J. S., Dudia, A. & Subramaniam, V.Spectroscopic characterization of enhancement of dye fluorescence in silver nanoparticle aggregates (2012)[Contribution to conference › Poster] Physics@FOM Veldhoven 2012. Gill, R., Tian, L., Amerongen, H. & Subramaniam, V.Establishing the molecular composition of alpha-synuclein oligomers by sub-stoichiometric labeling and single-molecule photobleaching (2012)[Contribution to conference › Poster] Physics@FOM Veldhoven 2012. Zijlstra, N., Blum, C., Segers-Nolten, G. M. J., Claessens, M. M. A. E. & Subramaniam, V.Answer to energy transfer debate could impact areas from photovoltaics to quantum information (2012)[Non-textual form › Web publication/site]. Blum, C.http://phys.org/news/2012-11-energy-debate-impact-areas-photovoltaics.htmlApplication potential of food protein modification (2012)In Advances in Chemical Engineering (pp. 135-182). IntechOpen. de Jongh, H. H. J. & Broersen, K.https://doi.org/10.5772/32114Atomic force microscopy under controlled conditions reveals structure of C-terminal region of alpha-synuclein in amyloid fibrils (2012)ACS nano, 6(7), 5952-5960. Sweers, K. K. M., van der Werf, K., Bennink, M. L. & Subramaniam, V.https://doi.org/10.1021/nn300863nDiffuse reflectance spectroscopy: a new guidance tool for improvement of biopsy procedures in lung malignancies (2012)Clinical lung cancer, 13(6), 424-431. Evers, D. J., Nachabé, R., Klomp, H. M., van Sandick, J. W., Wouters, M. W., Lucassen, G. W., Hendriks, B. H. W., Wesseling, J. & Ruers, T. J. M.https://doi.org/10.1016/j.cllc.2012.02.001First Experiences of Photoacoustic Imaging for Detection of Melanoma Metastases in Resected Human Lymph Nodes (2012)Lasers in surgery and medicine, 44(7), 541-549. Grootendorst, D., Jose, J., Wouters, M. W., van Boven, H. H., van der Hage, J. A., ten Haken, B., van Leeuwen, T., Steenbergen, W., Manohar, S. & Ruers, T. J. M.https://doi.org/10.1002/lsm.22058Kinetic measurements give new insights into lipid membrane permeabilization by alpha-synuclein oligomers (2012)Molecular biosystems, 8(1), 338-345. Stöckl, M. T., Claessens, M. M. A. E. & Subramaniam, V.https://doi.org/10.1039/c1mb05293dLocally Resolved Membrane Binding Affinity of the N-Terminus of α-Synuclein (2012)Biochemistry (USA), 51(19), 3960-3962. 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