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2023
2021
Specific labeling, isolation and visualization of tumor-derived extracellular vesicles via engineered synthetic epitopes (2021)[Contribution to conference › Poster] 4th Annual Meeting of the Netherlands Society for Extracellular Vesicles, NLSEV 2021. Enciso Martinez, A., de Jong, E. & Kocer, A.Specific labeling, isolation and visualization of tumor-derived extracellular vesicles via engineered synthetic epitopes (2021)[Contribution to conference › Poster] Annual Dutch Meeting on Molecular and Cellular Biophysics, Dutch Biophysics 2021. Enciso Martinez, A., de Jong, E. & Kocer, A.
2018
Combining Light-Gated and pH-Responsive Nanopore Based on PEG-Spiropyran Functionalization (2018)Advanced materials interfaces, 5(2). Article 1701051. Ma, T., Walko, M., Lepoitevin, M., Janot, J.-M., Balanzat, E., Kocer, A. & Balme, S.https://doi.org/10.1002/admi.201701051
2017
Drug delivery from engineered organisms and nanocarriers as monitored by multimodal imaging technologies (2017)AIMS Bioengineering, 4(2), 198-222. Calle, D., Yilmaz, D., Cerdan, S. & Kocer, A.https://doi.org/10.3934/bioeng.2017.2.198High-Throughput Simulations Reveal Membrane-Mediated Effects of Alcohols on MscL Gating (2017)Journal of the American Chemical Society, 139(7), 2664-2671. Melo, M. N., Arnarez, C., Sikkema, H., Kumar, N., Walko, M., Berendsen, H. J. C., Kocer, A., Marrink, S. J. & Ingólfsson, H. I.https://doi.org/10.1021/jacs.6b11091
2016
In situ, reversible gating of a mechanosensitive ion channel through protein-lipid interactions (2016)Frontiers in Physiology, 7. Article 409. Dimitrova, A., Walko, M., Shabestari, M. H., Kumar, P., Huber, M. & Kocer, A.https://doi.org/10.3389/fphys.2016.00409
2015
Top-down mass spectrometry of intact membrane protein complexes reveals oligomeric state and sequence information in a single experiment (2015)Protein science, 24(8), 1292-1300. Konijnenberg, A., Bannwarth, L., Yilmaz, D., Koçer, A., Venien-Bryan, C. & Sobott, F.https://doi.org/10.1002/pro.2703Image guided drug release from pH-sensitive Ion channel-functionalized stealth liposomes into an in vivo glioblastoma model (2015)Nanomedicine : nanotechnology, biology and medicine, 11(6), 1345-1354. Pacheco-Torres, J., Mukherjee, N., Walko, M., López-Larrubia, P., Ballesteros, P., Cerdan, S. & Kocer, A.https://doi.org/10.1016/j.nano.2015.03.014Mechanisms of mechanosensing-mechanosensitive channels, function and re-engineering (2015)Current opinion in chemical biology, 29, 120-127. Kocer, A.https://doi.org/10.1016/j.cbpa.2015.10.006Study of light-induced MscL gating by EPR spectroscopy (2015)European biophysics journal, 44, 557-565. Yilmaz, D., Dimitrova, A. I., Walko, M. & Kocer, A.https://doi.org/10.1007/s00249-015-1063-4
2014
Global structural changes of an ion channel during its gating are followed by ion mobility mass spectrometry (2014)Proceedings of the National Academy of Sciences of the United States of America, 111(48), 17170-17175. Konijnenberg, A., Yilmaz, D., Ingólfsson, H. I., Dimitrova, A., Marrink, S. J., Li, Z., Vénien-Bryan, C., Sobott, F. & Kocer, A.https://doi.org/10.1073/pnas.1413118111Highly parallel transport recordings on a membrane-on-nanopore chip at single molecule resolution (2014)Nano letters, 14(3), 1674-1680. Urban, M., Kleefen, A., Mukherjee, N., Seelheim, P., Windschiegl, B., Vor der Brüggen, M., Koçer, A. & Tampé, R.https://doi.org/10.1021/nl5002873Phytochemicals perturb membranes and promiscuously alter protein function (2014)ACS Chemical Biology, 9(8), 1788-1798. Ingólfsson, H. I., Thakur, P., Herold, K. F., Hobart, E. A., Ramsey, N. B., Periole, X., De Jong, D. H., Zwama, M., Yilmaz, D., Hall, K., Maretzky, T., Hemmings, H. C., Blobel, C., Marrink, S. J., Koçer, A., Sack, J. T. & Andersen, O. S.https://doi.org/10.1021/cb500086eStudying mechanosensitive ion channels with an automated patch clamp (2014)European biophysics journal, 43, 97-104. Barthmes, M., Jose, M. D. F., Birkner, J. P., Brüggemann, A., Wahl-Schott, C. & Koçer, A.https://doi.org/10.1007/s00249-014-0944-2The activation mode of the mechanosensitive ion channel, MscL, by lysophosphatidylcholine differs from tension-induced gating (2014)FASEB journal, 28(10), 4292-4302. Mukherjee, N., Jose, M. D., Birkner, J. P., Walko, M., Ingólfsson, H. I., Dimitrova, A., Arnarez, C., Marrink, S. J. & Koçer, A.https://doi.org/10.1096/fj.14-251579
2013
Bright ion channels and lipid bilayers (2013)Accounts of chemical research, 46(12), 2910-2923. Szymański, W., Yilmaz, D., Koçer, A. & Feringa, B. L.https://doi.org/10.1021/ar4000357On the role of individual subunits in MscL gating: "All for one, one for all?" (2013)FASEB journal, 27(3), 882-892. Mika, J. T., Birkner, J. P., Poolman, B. & Koçer, A.https://doi.org/10.1096/fj.12-214361Thin phosphatidylcholine films as background surfaces with further possibilities of functionalization for biomedical applications (2013)Colloids and surfaces B: Biointerfaces, 101, 189-195. Tauk, L., Thami, T., Ferez, L., Kocer, A., Janot, J.-M. & Déjardin, P.https://doi.org/10.1016/j.colsurfb.2012.06.028Transportation of Nanoscale Cargoes by Myosin Propelled Actin Filaments (2013)PLoS ONE, 8(2). Article e55931. Persson, M., Gullberg, M., Tolf, C., Lindberg, A. M., Månsson, A. & Kocer, A.https://doi.org/10.1371/journal.pone.0055931Well-defined microapertures for ion channel biosensors (2013)Analytical chemistry, 85(2), 811-815. Halža, E., Bro, T. H., Bilenberg, B. & Koçer, A.https://doi.org/10.1021/ac303005g
2012
Hydrophobic gating of mechanosensitive channel of large conductance evidenced by single-subunit resolution (2012)Proceedings of the National Academy of Sciences of the United States of America, 109(32), 12944-12949. Birkner, J. P., Poolman, B. & Koçer, A.https://doi.org/10.1073/pnas.1205270109Nanopore sensors: From hybrid to abiotic systems (2012)Biosensors & bioelectronics, 38(1), 1-10. Kocer, A., Tauk, L. & Déjardin, P.https://doi.org/10.1016/j.bios.2012.05.013Protein-repellent functionalizable surfaces based on covalently bonded phospholipids with phosphorylcholine head (2012)In Proteins at Interfaces III State of the Art (pp. 677-692) (ACS Symposium Series; Vol. 1120). Ferez, L., Thami, T., Tauk, L., Akpalo, E., Flaud, V., Kocer, A., Janot, J.-M. & Déjardin, P.https://doi.org/10.1021/bk-2012-1120.ch031
2011
In vitro synthesis and oligomerization of the mechanosensitive channel of large conductance, MscL, into a functional ion channel (2011)FEBS letters, 585(1), 249-254. Price, C. E., Kocer, A., Kol, S., Van Der Berg, J. P. & Driessen, A. J. M.https://doi.org/10.1016/j.febslet.2010.11.057Taming membranes: Functional immobilization of biological membranes in hydrogels (2011)PLoS ONE, 6(5). Article e20435. Kusters, I., Mukherjee, N., de Jong, M. R., Tans, S., Koçer, A. & Driessen, A. J. M.https://doi.org/10.1371/journal.pone.0020435The molecular basis for antimicrobial activity of pore-forming cyclic peptides (2011)Biophysical journal, 100(10), 2422-2431. Cirac, A. D., Moiset, G., Mika, J. T., Koçer, A., Salvador, P., Poolman, B., Marrink, S. J. & Sengupta, D.https://doi.org/10.1016/j.bpj.2011.03.057
2010
Functional liposomal membranes for triggered release (2010)In Liposomes (pp. 243-255) (Methods in molecular biology (Clifton, N.J.)). Koçer, A.https://doi.org/10.1007/978-1-60327-360-2_16
2008
Biofunctionalized Lipid-Polymer Hybrid Nanocontainers with Controlled Permeability (2008)Nano letters, 8(4), 1105-1110. Dudia, A., Kocer, A., Subramaniam, V. & Kanger, J. S.https://doi.org/10.1021/nl073211b
2007
A remote controlled valve in liposomes for triggered liposomal release (2007)Journal of Liposome Research, 17(3-4), 219-225. Koçer, A.https://doi.org/10.1080/08982100701528203Synthesis and utilization of reversible and irreversible light-activated nanovalves derived from the channel protein MscL (2007)Nature protocols, 2, 1426-1437. Koçer, A., Walko, M. & Feringa, B. L.https://doi.org/10.1038/nprot.2007.196
2006
Rationally designed chemical modulators convert a bacterial channel protein into a pH-sensory valve (2006)Angewandte Chemie (international edition), 45(19), 3126-3130. Koçer, A., Walko, M., Bulten, E., Halza, E., Feringa, B. L. & Meijberg, W.https://doi.org/10.1002/anie.200503403
2005
Chemistry: A light-actuated nanovalve derived from a channel protein (2005)Science, 309(5735), 755-758. Koçer, A., Walko, M., Meijberg, W. & Feringa, B. L.https://doi.org/10.1126/science.1114760