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2026

Image-guided navigation in liver surgery (2026) [Thesis › PhD Thesis - Research UT, graduation UT] . University of Twente . Olthof, K. https://doi.org/10.3990/1.9789036573566 Robot-assisted image-guided surgical navigation: Electromagnetic tracking for abdominopelvic lymph node localization (2026) [Thesis › PhD Thesis - Research UT, graduation UT] . University of Twente . Aguilera Saiz, L. https://doi.org/10.3990/1.9789036572965 Hyperspectral imaging for laparoscopic colerectal cancer surgery (2026) [Thesis › PhD Thesis - Research UT, graduation UT] . University of Twente . Witteveen, M. https://doi.org/10.3990/1.9789036572989 Precise and minimally invasive localization of pelvic nodes during robot-assisted surgery using image-guided navigation (2026) International journal of computer assisted radiology and surgery (E-pub ahead of print/First online) . Saiz, L. A. , Heerink, W. J. , Groen, H. C. , Hiep, M. A. J. , Venix, L. L. P. G. , Kerkhof, E. , van der Poel, H. G. , Wit, E. M. K. , Nieuwenhuijzen, J. A. , Roeleveld, T. A. , Vis, A. N. , Donswijk, M. L. , van Leeuwen, P. J. & Ruers, T. J. M. https://doi.org/10.1007/s11548-026-03768-z A proof-of-concept study of optical tissue sensing during vacuum-assisted breast biopsy procedures (2026) Minimally Invasive Therapy & Allied Technologies (E-pub ahead of print/First online) . Feenstra, L. , Drukker, C. A. , Van Duijnhoven, F. , Mann, R. , Poelman, E. , Bruining, A. , Da Silva Guimaraes, M. , Dasht Bozorg, B. & Ruers, T. J. M. https://doi.org/10.1080/13645706.2026.2713615 Real-time surgical navigation for intraoperative lymph node localization during targeted robot-assisted pelvic and retroperitoneal lymph node dissection (2026) Surgical endoscopy, 40(8) , 7223-7231 . Hiep, M. A. J. , Heerink, W. J. , Groen, H. C. , Venix, L. P. J. , Aguilera Saiz, L. , Kerkhof, E. , van der Poel, H. G. , van Leeuwen, P. J. , van de Kamp, M. W. , Tummers, Q. R. J. G. & Ruers, T. J. M. https://doi.org/10.1007/s00464-026-13187-5 Emission of Photons by Near-Infrared PbS Quantum Dot Nanocrystals for a Large Diameter Range (2026) The Journal of physical chemistry C, 130(22) , 7584-7593 . Schulz, A. S. , Blum, C. , Vancso, G. J. , Huskens, J. & Vos, W. L. https://doi.org/10.1021/acs.jpcc.6c00396 Particle-membrane interactions in biomimetic vesicles: from engulfment to flexible confinement (2026) [Thesis › PhD Thesis - Research UT, graduation UT] . University of Twente . van der Ham, S. https://doi.org/10.3990/1.9789036571975 Dynamic bidirectional coupling of membrane morphology and rod organization in flexible vesicles (2026) Proceedings of the National Academy of Sciences of the United States of America, 123(21) . Article e2604848123 . van der Ham, S. , Matias, A. F. V. , Dijkstra, M. & Vutukuri, H. R. https://doi.org/10.1073/pnas.2604848123 Shape anisotropy governs organization of active rods: Swarming, turbulence, flocking, and jamming (2026) Science, 392(6794) , 202-203 . Shelke, Y. , Nair, A. S. & Vutukuri, H. R. https://doi.org/10.1126/science.ady7618 Clinical factors influencing diffuse reflection spectroscopy for prostate tissue discrimination (2026) Biomedical optics express, 17(4) , 2035-2048 . de Roode, L. M. , Schoop, R. A. L. , Wijkhuizen, M. , Witteveen, M. , Guimaraes, M. D. S. , van Leeuwen, P. J. , van der Poel, H. G. , de Boer, L. L. & Ruers, T. J. M. https://doi.org/10.1364/BOE.587647 Design and performance of an illumination-based hyperspectral laparoscopic system (2026) Review of scientific instruments, 97(4) . Article 045201 . Witteveen, M. , Sterenborg, H. J. C. M. & Ruers, T. https://doi.org/10.1063/5.0287851 Navigated hepatic tumor resection using intraoperative ultrasound imaging (2026) International journal of computer assisted radiology and surgery, 21(4) , 877-886 . Olthof, K. A. , Ruers, T. J. M. , Natali, T. , Venix, L. P. J. , Smit, J. N. , den Hartog, A. G. , Kok, N. F. M. , Fusaglia, M. & Kuhlmann, K. F. D. https://doi.org/10.1007/s11548-026-03581-8 Toward augmented reality in laparoscopic liver surgery using electromagnetic tracking: a clinical feasibility study (2026) Surgical endoscopy, 40(4) , 3538-3547 . Olthof, K. A. , Venix, L. P. J. , Pruijt, M. , den Hartog, A. G. , Kok, N. F. M. , Ruers, T. J. M. , Fusaglia, M. & Kuhlmann, K. F. D. https://doi.org/10.1007/s00464-026-12741-5 Automated Generation of Supported Lipid Bilayer Arrays with Controlled Receptor Densities in Well Plates (2026) ACS Applied Materials & Interfaces, 18(13) , 19946-19957 . Schlicke, J. , Movilli, J. , Wasserberg, D. , Biendara, R. N. , Aphrham, S. , Jonkheijm, P. , Uslu, E. , Boons, G. J. P. H. , Molenaar, R. , Elbert, R. , de Wit, S. , van der Vries, E. & Huskens, J. https://doi.org/10.1021/acsami.6c02551 Separating surface reflection for calibration: implicit calibration in hyperspectral imaging (2026) Journal of physics: Photonics, 8(1) . Article 015080 . Witteveen, M. , Maffeis, G. , Taroni, P. , Jade de Jong, L. , Ruers, T. & Sterenborg, H. J. C. M. https://doi.org/10.1088/2515-7647/ae51d5 Programmable persistent random walks in active Brownian particles govern emergent dynamics (2026) Communications Physics, 9(1) . Article 166 (E-pub ahead of print/First online) . Sunkesula Raghavendra, T. , Shelke, Y. , van der Ham, S. , Nair S, A. & Vutukuri, H. R. https://doi.org/10.1038/s42005-026-02596-6 Perspective on the current state of hyperspectral/multispectral imaging for minimally invasive surgery (2026) Journal of biomedical optics, 31(3) . Article 030601 . Witteveen, M. , Mooij, C. , Dashtbozorg, B. & Ruers, T. https://doi.org/10.1117/1.JBO.31.3.030601 Transmission of the amyloid fold between alpha-synuclein and other protein species (2026) [Thesis › PhD Thesis - Research external, graduation UT] . University of Twente . Vaneyck, J. https://doi.org/10.3990/1.9789036570817 3D Ultrasound Volume Reconstruction Using a CNN-Transformer Model and IMU Data (2026) In Simplifying Medical Ultrasound: 6th International Workshop, ASMUS 2025, held in Conjunction with MICCAI 2025, Proceedings (pp. 43-52) (Lecture Notes in Computer Science; Vol. 16165 LNCS) . Springer . Wijkhuizen, M. , Adriaans, C. A. , van Karnenbeek, L. M. , Natali, T. , Ruers, T. , Geldof, F. & Dashtbozorg, B. https://doi.org/10.1007/978-3-032-06329-8_5

2025

Diffuse reflectance spectroscopy for enhanced diagnostic precision in breast cancer (2025) Journal of translational medicine (E-pub ahead of print/First online) . Feenstra, L. , Da Silva Guimaraes, M. , Drukker, C. A. , van Duijnhoven, F. , Dashtbozorg, B. & Ruers, T. J. M. https://doi.org/10.1186/s12967-025-07556-2 Controlling interfacial protein adsorption, desorption and aggregation in biomolecular condensates (2025) Nature communications, 16(1) . Article 10172 . Visser, B. S. , van Haren, M. H. I. , Lipiński, W. P. , van Leijenhorst-Groener, K. A. , Claessens, M. M. A. E. , Queirós, M. V. A. , Ramos, C. H. I. , Eeftens, J. & Spruijt, E. https://doi.org/10.1038/s41467-025-65030-5 Image-guided surgical navigation for inguinal sentinel lymph node procedures in vulvar cancer (2025) International journal of gynecological cancer, 35(12) . Aguilera Saiz, L. , Hiep, M. A. J. , Groen, H. C. , Heerink, W. J. , Zijlmans, H. J. M. A. A. , Schuurman, T. N. , Rijken, M. J. , Lok, C. A. R. & Ruers, T. J. M. https://doi.org/10.1016/j.ijgc.2025.102714 Prostate Volume and PSA-Density Estimation by Transabdominal Ultrasound: Prospective Evidence of Comparative Accuracy to MRI and Transrectal Ultrasound in Prostate Cancer Early Diagnostics (2025) Prostate, 85(16) , 1488-1496 . Kurucz, L. M. , Natali, T. , Westerhout, S. , Hagens, M. , Visser, J. J. , van Muilekom, E. A. M. , van Kesteren, J. D. , Schoots, I. , Boellaard, T. N. , Agrotis, G. , Dashtbozorg, B. , Ruers, T. J. M. , van Leeuwen, P. J. & Mertens, L. S. https://doi.org/10.1002/pros.70036 Real-time peri-operative microcalcification detection in superficial breast tissues (2025) Scientific reports, 15(1) . Article 17029 . van der Stel, S. D. , Niemitz, L. , Sørensen, S. , Feenstra, L. , Andersson-Engels, S. , Sterenborg, H. J. C. M. , Ruers, T. J. M. & Burke, R. https://doi.org/10.1038/s41598-025-01629-4 Toward real-time margin assessment in breast-conserving surgery with hyperspectral imaging (2025) Scientific reports, 15(1) . Article 9556 . Jong, L. J. S. , Veluponnar, D. , Geldof, F. , Sanders, J. , Da Silva Guimaraes, M. , Vrancken Peeters, M. J. T. F. D. , van Duijnhoven, F. , Sterenborg, H. J. C. M. , Dashtbozorg, B. & Ruers, T. J. M. https://doi.org/10.1038/s41598-025-94526-9 From Shallow to Full Wrapping: Geometry and Deformability Dictate Lipid Vesicle Internalization (2025) Nano letters, 25(46) , 16451-16458 . van der Ham, S. , Brown, A. , Kusumaatmaja, H. & Vutukuri, H. R. https://doi.org/10.1021/acs.nanolett.5c04322 FibrilPaint to determine the length of Tau amyloids in fluids (2025) Proceedings of the National Academy of Sciences of the United States of America, 122(44) . Article e2502847122 . Aragonès Pedrola, J. , Dekker, F. A. , Garfagnini, T. , Mayer, G. , Koopman, M. B. , Bergmeijer, M. , Heesink, G. , Rots, I. , Claessens, M. M. A. E. , Förster, F. , Hoozemans, J. J. M. , Jensen, H. , Friedler, A. & Rüdiger, S. G. D. https://doi.org/10.1073/pnas.2502847122 Phasor theory of fluorescence lifetime imaging utilized on a maximum range of frequencies for prostate tissue analysis (2025) Biomedical optics express, 16(11) , 4885-4901 . Schoop, R. A. L. , de Roode, L. M. , Alfonso-García, A. , Fereidouni, F. , de Boer, L. L. , Marcu, L. & Ruers, T. J. M. https://doi.org/10.1364/BOE.575841 The impact of 3-dimensional models and surgical navigation for open liver surgery (2025) International journal of computer assisted radiology and surgery, 20(11) , 2213-2218 . Olthof, K. A. , Fusaglia, M. , den Hartog, A. G. , Kok, N. F. M. , Ruers, T. J. M. & Kuhlmann, K. F. D. https://doi.org/10.1007/s11548-025-03455-5 Exploring the Effects of the Guanidinium:Methylammonium Ratio on the Photophysical Dynamics of ⟨n⟩ = 5 ACI Perovskites (2025) The Journal of physical chemistry C, 129(40) , 18118-18127 . Einhaus, L. M. , Zhang, X. , Korterik, J. P. , Molenaar, R. , Mul, G. , ten Elshof, J. E. & Huijser, A. https://doi.org/10.1021/acs.jpcc.5c04999 Automatic prostate volume estimation in transabdominal ultrasound images (2025) European journal of radiology, 191 . Article 112274 . Natali, T. , Kurucz, L. M. , Fusaglia, M. , Mertens, L. S. , Ruers, T. J. M. , van Leeuwen, P. J. & Dashtbozorg, B. https://doi.org/10.1016/j.ejrad.2025.112274 Perforator mapping for head and neck reconstructive surgery: A novel personalized approach using magnetic resonance angiography based 3D models and 3D-printing (2025) Frontiers in oncology, 15 . Article 1655904 . de Geer, A. F. , Mulder, I. , ter Beek, L. C. , te Boekhorst, A. S. , Plakké, B. I. , Karssemakers, L. H. E. , Dirven, R. , Lohuis, P. J. F. M. , Ruers, T. J. M. , Siepel, F. J. , de Koekkoek-Doll, P. K. , van Alphen, M. J. A. & Schreuder, W. H. https://doi.org/10.3389/fonc.2025.1655904 Physics inspired neural network for optical property retrieval from diffuse reflectance (2025) Frontiers in Photonics, 6 . Article 1634102 . Witteveen, M. , Natali, T. , Ruers, T. J. M. & Dashtbozorg, B. https://doi.org/10.3389/fphot.2025.1634102 Making the Invisible Visible: A Molecular View on Early Stage Protein Aggregation of α-Synuclein (2025) [Thesis › PhD Thesis - Research UT, graduation UT] . University of Twente . Heesink, G. https://doi.org/10.3990/1.9789036568401 Single‐Virus Stochastic Biosensing: Proof of Concept for SARS‐CoV‐2 Detection in Complex Medium Using CMOS‐Based Nanocapacitor Arrays (2025) Advanced Sensor Research, 4(8) . Article e00193 . Tripathy, S. , Saghafi, M. , Dutta, S. K. , van der Ham, S. , Salvanos, D. , Laborde, C. , Martina, B. & Lemay, S. G. https://doi.org/10.1002/adsr.202400193 Interfacial spin-orbit coupling in superconducting hybrid systems (2025) Physical review B: Covering condensed matter and materials physics, 112 . Article 024514 (E-pub ahead of print/First online) . Mazanik, A. A. , Kokkeler, T. , Tokatly, I. V. & Bergeret, F. S. https://doi.org/10.1103/dsxt-phyk Tracking systems in navigated lower abdominopelvic surgery, a review (2025) Clinical Surgical Oncology, 4(2) . Article 100084 . Aguilera Saiz, L. , Groen, H. C. , Heerink, W. J. & Ruers, T. J. M. https://doi.org/10.1016/j.cson.2025.100084 Synthetic cells get into shape: Biophysics (2025) Nature physics, 21(5) , 697-698 . Agudo-Canalejo, J. & Vutukuri, H. R. https://doi.org/10.1038/s41567-025-02906-9 Balancing act: lipid-to-protein ratios steer the aggregation fate of α-synuclein (2025) Trends in Biochemical Sciences, 50(4) , 285-286 . Blum, C. & Claessens, M. M. A. E. https://doi.org/10.1016/j.tibs.2025.02.001 Feasibility of Image-guided Navigation with Electromagnetic Tracking During Robot-assisted Sentinel Node Biopsy: A Prospective Study (2025) European urology, 87(4) , 482-490 . Aguilera Saiz, L. , Heerink, W. J. , Groen, H. C. , Hiep, M. A. J. , van der Poel, H. G. , Wit, E. M. K. , Nieuwenhuijzen, J. A. , Roeleveld, T. A. , Vis, A. N. , Donswijk, M. L. , van Leeuwen, P. J. & Ruers, T. J. M. https://doi.org/10.1016/j.eururo.2024.07.022 Surgeon personality diversity across generations and subspecialties (2025) The Surgeon, 23(2) , 78-86 . Sier, V. Q. , Schmitz, R. F. , Wertenbroek, R. W. A. M. , Schepers, A. , van der Vorst, J. R. , Beetz, I. , Bessems, M. A. , Boerma, D. , Castenmiller, P. H. , De Bruin, J. L. , De Jonge, C. , Den Hoed, P. T. , Derksen, R. J. , Doornebosch, P. G. , Duijff, J. W. , Engelen, M. P. J. , Evers, D. J. , Furnée, E. J. B. , Gardenbroek, T. J. , … Van Essen, J. A. https://doi.org/10.1016/j.surge.2025.02.003 Detecting cancer with hyperspectral imaging: To improve the outcome of breast-conserving surgery (2025) [Thesis › PhD Thesis - Research UT, graduation UT] . University of Twente . Jong, L.-J. S. https://doi.org/10.3990/1.9789036563673 Optics and acoustics for margin assessment during breast-conserving surgeries (2025) [Thesis › PhD Thesis - Research UT, graduation UT] . University of Twente . Veluponnar, D. https://doi.org/10.3990/1.9789036565028 Kinetic Pathways to Gelation and Effects of Flow-Induced Structuring in Depletion Gels (2025) Industrial & engineering chemistry research, 64(8) , 4581–4595 . Colombo, G. , Lehéricey, P. , Müller, F. J. , Majji, M. V. , Vutukuri, H. R. , Swan, J. W. & Vermant, J. https://doi.org/10.1021/acs.iecr.4c03873 Hybrid registration of the fibula for electromagnetically navigated osteotomies in mandibular reconstructive surgery: a phantom study (2025) International journal of computer assisted radiology and surgery, 20(2) , 369–377 . Aukema, L. M. N. , de Geer, A. F. , van Alphen, M. J. A. , Schreuder, W. H. , van Veen, R. L. P. , Ruers, T. J. M. , Siepel, F. J. & Karakullukcu, M. B. https://doi.org/10.1007/s11548-024-03282-0 Real-time intraoperative ultrasound registration for accurate surgical navigation in patients with pelvic malignancies (2025) International journal of computer assisted radiology and surgery, 20(2) , 249-258 . Hiep, M. A. J. , Heerink, W. J. , Groen, H. C. , Aguilera Saiz, L. , Grotenhuis, B. A. , Beets, G. L. , Aalbers, A. G. J. , Kuhlmann, K. F. D. & Ruers, T. J. M. https://doi.org/10.1007/s11548-024-03299-5 LVAD Physiology (2025) In Mechanical Circulatory Support (pp. 59-83) . Springer Science and Business Media . Rocchi, M. , Chivukula, V. K. , Palmieri, L. , Fresiello, L. & Amarelli, C. https://doi.org/10.1007/978-3-030-86172-8_6-1

2024

Development and external evaluation of a self-learning auto-segmentation model for Colorectal Cancer Liver Metastases Assessment (COALA) (2024) Insights into Imaging, 15(1) . Article 279 . Bereska, J. I. , Zeeuw, M. , Wagenaar, L. , Jenssen, H. B. , Wesdorp, N. J. , van der Meulen, D. , Bereska, L. F. , Gavves, E. , Janssen, B. V. , Besselink, M. G. , Marquering, H. A. , van Waesberghe, J. H. T. M. , Aghayan, D. L. , Pelanis, E. , van den Bergh, J. , Nota, I. I. M. , Moos, S. , Kemmerich, G. , Syversveen, T. , … Ruers, T. M. https://doi.org/10.1186/s13244-024-01820-7 Imaging Photoplethysmography (iPPG) in Head and Neck Reconstructive Surgery: A Novel Technique for Noninvasive Flap Perfusion Monitoring (2024) Lasers in surgery and medicine, 56(10) , 811-820 . van der Stel, S. D. , Lai, M. , Groen, H. C. , Dirven, R. , Karakullukcu, M. B. , Karssemakers, L. H. E. , van Gastel, M. , Hendriks, B. H. W. , Ruers, T. J. M. & Schreuder, W. H. https://doi.org/10.1002/lsm.23859 Rotaxanes with a photoresponsive macrocycle modulate the lipid bilayers of large and giant unilamellar vesicles (2024) Communications Chemistry, 7(1) . Article 255 . Conthagamage, U. N. K. , Rajeshwar T, R. , van der Ham, S. , Akhtar, N. , Davis, M. L. , Jayawardana, S. G. , Lopez, L. , Vutukuri, H. R. , Smith, J. C. , Smith, M. D. & García-López, V. https://doi.org/10.1038/s42004-024-01343-8 The influence of the da Vinci surgical robot on electromagnetic tracking in a clinical environment (2024) Journal of robotic surgery, 18(1) . Article 54 . Aguilera Saiz, L. , Groen, H. C. , Heerink, W. J. & Ruers, T. J. M. https://doi.org/10.1007/s11701-023-01812-7 Tissue-probe contact assessment during robotic surgery using single-fiber reflectance spectroscopy (2024) Biomedical optics express, 15(12) , 6756-6767 . de Roode, L. M. , de Boer, L. L. , Sterenborg, H. J. C. M. & Ruers, T. J. M. https://doi.org/10.1364/BOE.534558 Framework for Deep Learning Based Multi-Modality Image Registration of Snapshot and Pathology Images (2024) IEEE journal of biomedical and health informatics, 28(11) , 6699-6711 . Schoop, R. A. L. , de Roode, L. M. , de Boer, L. L. & Dashtbozorg, B. https://doi.org/10.1109/JBHI.2024.3444908 Stage IV colorectal cancer: Evaluating current and future treatment modalities (2024) [Thesis › PhD Thesis - Research UT, graduation UT] . University of Twente . Krul, M. F. https://doi.org/10.3990/1.9789036562195 Feasibility of Diffuse Reflection Spectroscopy for Intraoperative Margin Assessment During Prostatectomy (2024) European Urology Open Science, 67 , 62-68 . de Roode, L. M. , de Boer, L. L. , Da Silva Guimaraes, M. , van Leeuwen, P. J. , van der Poel, H. G. , Dashtbozorg, B. & Ruers, T. J. M. https://doi.org/10.1016/j.euros.2024.07.112 Separating Surface Reflectance from Volume Reflectance in Medical Hyperspectral Imaging (2024) Diagnostics, 14(16) . Article 1812 . Jong, L. J. S. , Post, A. L. , Geldof, F. , Dashtbozorg, B. , Ruers, T. J. M. & Sterenborg, H. J. C. M. https://doi.org/10.3390/diagnostics14161812 Additional file 1 of Social dynamics impact scolding behaviour in captive groups of common ravens (Corvus corax) (2024) [Dataset Types › Dataset] . figshare . Blum, C. R. , Fitch, W. T. & Bugnyar, T. https://doi.org/10.6084/m9.figshare.26553068 Additional file 2 of Social dynamics impact scolding behaviour in captive groups of common ravens (Corvus corax) (2024) [Dataset Types › Dataset] . figshare . Blum, C. R. , Fitch, W. T. & Bugnyar, T. https://doi.org/10.6084/m9.figshare.26553071 Additional file 3 of Social dynamics impact scolding behaviour in captive groups of common ravens (Corvus corax) (2024) [Dataset Types › Dataset] . figshare . Blum, C. R. , Fitch, W. T. & Bugnyar, T. https://doi.org/10.6084/m9.figshare.26553074 Advances in Deep Learning Methods for Prostate Segmentation and Volume Estimation in Ultrasound Imaging (2024) Applied Sciences, 14(15) . Article 6550 . Kurucz, L. M. , Natali, T. , Fusaglia, M. & Dashtbozorg, B. https://doi.org/10.3390/app14156550 Surgical navigation for targeted retroperitoneal lymph-node removal: a randomised, controlled, phase 3 trial (2024) EClinicalMedicine, 74 . Article 102754 . Groen, H. C. , Wit, E. M. K. , Heerink, W. J. , Kuhlmann, K. F. D. , Nijkamp, J. A. , van Veen, R. , Schoots, I. G. , Balduzzi, S. , Zijlmans, H. J. M. A. A. , van Leeuwen, P. J. , van der Poel, H. G. & Ruers, T. J. M. https://doi.org/10.1016/j.eclinm.2024.102754 Exploring fluorescence-based methods for detection and quantification of model viruses and nanoplastics (2024) [Thesis › PhD Thesis - Research UT, graduation UT] . University of Twente . Chatterjee, S. https://doi.org/10.3990/1.9789036561617 Deformable multi-modal image registration for the correlation between optical measurements and histology images (2024) Journal of biomedical optics, 29(6) . Article 066007 . Feenstra, L. , Lambregts, M. , Ruers, T. J. M. & Dashtbozorg, B. https://doi.org/10.1117/1.JBO.29.6.066007 Unifying Atoms and Colloids near the Glass Transition through Bond-Order Topology (2024) Physical review letters, 132(21) . Article 218202 . Stricker, L. , Derlet, P. M. , Demirörs, A. F. , Vutukuri, H. R. & Vermant, J. https://doi.org/10.1103/PhysRevLett.132.218202 14-3-3τ as a Modulator of Early α-Synuclein Multimerization and Amyloid Formation (2024) ACS chemical neuroscience, 15(9) , 1926-1936 . Heesink, G. , van den Oetelaar, M. C. M. , Semerdzhiev, S. A. , Ottmann, C. , Brunsveld, L. , Blum, C. & Claessens, M. M. A. E. https://doi.org/10.1021/acschemneuro.4c00100 A surgical navigation system to aid the ablation of vanished colorectal liver metastases (2024) British journal of surgery, 111(5) . Article znae110 . Olthof, K. , Smit, J. , Fusaglia, M. , Kok, N. , Ruers, T. & Kuhlmann, K. https://doi.org/10.1093/bjs/znae110 Resection Ratios and Tumor Eccentricity in Breast-Conserving Surgery Specimens for Surgical Accuracy Assessment (2024) Cancers, 16(10) . Article 1813 . Veluponnar, D. , Dashtbozorg, B. , Da Silva Guimaraes, M. , Vrancken Peeters, M.-J. T. F. D. , de Boer, L. L. & Ruers, T. J. M. https://doi.org/10.3390/cancers16101813 Margin assessment during breast conserving surgery using diffuse reflectance spectroscopy (2024) Journal of biomedical optics, 29(4) . Article 045006 . Veluponnar, D. , de Boer, L. L. , Dashtbozorg, B. , Jong, L.-J. S. , Geldof, F. , Da Silva Guimaraes, M. , Sterenborg, H. J. C. M. , Vrancken-Peeters, M.-J. T. F. D. , van Duijnhoven, F. & Ruers, T. https://doi.org/10.1117/1.JBO.29.4.045006 Role of Shape in Particle-Lipid Membrane Interactions: From Surfing to Full Engulfment (2024) ACS nano, 18(15) , 10407–10416 . van der Ham, S. , Agudo-Canalejo, J. & Vutukuri, H. R. https://doi.org/10.1021/acsnano.3c11106 Hepatic arterial infusion pump chemotherapy combined with systemic chemotherapy for borderline resectable and unresectable colorectal liver metastases: phase II feasibility study (2024) British journal of surgery, 111(4) . Krul, M. F. , Kok, N. F. M. , Osmani, H. , Buisman, F. E. , Koerkamp, B. G. , Grunhagen, D. J. , Verhoef, C. , Mostert, B. , Snaebjornsson, P. , Westerink, B. , Klompenhouwer, E. G. , Donswijk, M. L. , Ruers, T. J. M. , Douma, J. A. J. , van Blijderveen, N. , Peter Kingham, T. , D’Angelica, M. I. , Kemeny, N. E. , Bolhuis, K. , … Kuhlmann, K. F. D. https://doi.org/10.1093/bjs/znae089 Automatic hepatic tumor segmentation in intra-operative ultrasound: a supervised deep-learning approach (2024) Journal of medical imaging, 11(2) . Article 024501 . Natali, T. , Zhylka, A. , Olthof, K. , Smit, J. N. , Baetens, T. R. , Kok, N. F. M. , Kuhlmann, K. F. D. , Ivashchenko, O. , Ruers, T. J. M. & Fusaglia, M. https://doi.org/10.1117/1.JMI.11.2.024501 Advancements in margin assessment for oncological surgery: Integrating diffuse reflectance spectroscopy and ultrasound imaging (2024) [Thesis › PhD Thesis - Research external, graduation UT] . University of Twente . Geldof, F. https://doi.org/10.3990/1.9789036559768 Spatial and Spectral Reconstruction of Breast Lumpectomy Hyperspectral Images (2024) Sensors (Switzerland), 24(5) . Article 1567 . Jong, L. J. S. , Appelman, J. G. C. , Sterenborg, H. J. C. M. , Ruers, T. J. M. & Dashtbozorg, B. https://doi.org/10.3390/s24051567 Toward the use of diffuse reflection spectroscopy for intra-operative tissue discrimination during sarcoma surgery (2024) Journal of biomedical optics, 29(2) . Article 027001 . Geldof, F. , Schrage, Y. M. , van Houdt, W. J. , Sterenborg, H. J. C. M. , Dashtbozorg, B. & Ruers, T. J. M. https://doi.org/10.1117/1.JBO.29.2.027001 Point Projection Mapping System for Tracking, Registering, Labeling, and Validating Optical Tissue Measurements (2024) Journal of imaging, 10(2) . Article 37 . Feenstra, L. , van der Stel, S. D. , Da Silva Guimaraes, M. , Dashtbozorg, B. & Ruers, T. J. M. https://doi.org/10.3390/jimaging10020037 Amyloid Scaffolds for Cartilage Tissue Regeneration (2024) [Thesis › PhD Thesis - Research UT, graduation UT] . University of Twente . van Dalen, M. C. E. https://doi.org/10.3990/1.9789036560757 Photoacoustic Imaging of Colorectal Cancer in Ex-vivo Samples: A Preliminary Study (2024) In Photons Plus Ultrasound: Imaging and Sensing 2024 . Article 128421B (Proceedings of SPIE; Vol. 12842) . SPIE . Ghanbarzadeh-Dagheyan, A. , Francis, K. J. , Mooij, C. , van der Stel, S. , Kuniyil Ajith Singh, M. & Ruers, T. https://doi.org/10.1117/12.3002767 Ultrasound guidance in navigated liver surgery: toward deep-learning enhanced compensation of deformation and organ motion (2024) International journal of computer assisted radiology and surgery, 19(1) , 1-9 . Smit, J. N. , Kuhlmann, K. F. D. , Thomson, B. R. , Kok, N. F. M. , Ruers, T. J. M. & Fusaglia, M. https://doi.org/10.1007/s11548-023-02942-x

2023

2022

2021

2020

Accurate surgical navigation with real-time tumor tracking in cancer surgery (2020) npj Precision Oncology, 4(1) . Article 8 . Kok, E. N. D. , Eppenga, R. , Kuhlmann, K. F. D. , Groen, H. C. , van Veen, R. , van Dieren, J. M. , de Wijkerslooth, T. R. , van Leerdam, M. , Lambregts, D. M. J. , Heerink, W. J. , Hoetjes, N. J. , Ivashchenko, O. , Beets, G. L. , Aalbers, A. G. J. , Nijkamp, J. & Ruers, T. J. M. https://doi.org/10.1038/s41698-020-0115-0 Hyperspectral imaging for resection margin assessment during breast cancer surgery (2020) [Thesis › PhD Thesis - Research external, graduation UT] . University of Twente . Kho, E. https://doi.org/10.3990/1.9789036549240 Nonlinear multispectral imaging for tumor delineation (2020) Journal of biomedical optics, 25(9) . Article 096001 . Beletkaia, E. , Dashtbozorg, B. , Jansen, R. G. , Ruers, T. J. M. & Offerhaus, H. L. https://doi.org/10.1117/1.JBO.25.9.096001 Using Diffuse Reflectance Spectroscopy to Distinguish Tumor Tissue From Fibrosis in Rectal Cancer Patients as a Guide to Surgery (2020) Lasers in surgery and medicine, 52(7) , 604-611 . Baltussen, E. J. M. , Brouwer de Koning, S. G. , Sanders, J. , Aalbers, A. G. J. , Kok, N. F. M. , Beets, G. L. , Hendriks, B. H. W. , Sterenborg, H. J. C. M. , Kuhlmann, K. F. D. & Ruers, T. J. M. https://doi.org/10.1002/lsm.23196 Toward Assessment of Resection Margins Using Hyperspectral Diffuse Reflection Imaging (400–1,700 nm) During Tongue Cancer Surgery (2020) Lasers in surgery and medicine, 52(6) , 496-502 . Brouwer de Koning, S. G. , Weijtmans, P. , Karakullukcu, M. B. , Shan, C. , Baltussen, E. J. M. , Smit, L. A. , van Veen, R. L. P. , Hendriks, B. H. W. , Sterenborg, H. J. C. M. & Ruers, T. J. M. https://doi.org/10.1002/lsm.23161 Association of Image-Guided Navigation With Complete Resection Rate in Patients With Locally Advanced Primary and Recurrent Rectal Cancer: A Nonrandomized Controlled Trial (2020) JAMA network open, 3(7) , e208522 . Kok, E. N. D. , van Veen, R. , Groen, H. C. , Heerink, W. J. , Hoetjes, N. J. , van Werkhoven, E. , Beets, G. L. , Aalbers, A. G. J. , Kuhlmann, K. F. D. , Nijkamp, J. & Ruers, T. J. M. https://doi.org/10.1001/jamanetworkopen.2020.8522 Current advances in colorectal cancer treatment (2020) [Thesis › PhD Thesis - Research UT, graduation UT] . University of Twente . Kok-de Goede, E. N. D. https://doi.org/10.3990/1.9789036549899 A workflow for automated segmentation of the liver surface, hepatic vasculature and biliary tree anatomy from multiphase MR images (2020) Magnetic resonance imaging, 68 , 53-65 . Ivashchenko, O. V. , Rijkhorst, E. J. , ter Beek, L. C. , Hoetjes, N. J. , Pouw, B. , Nijkamp, J. , Kuhlmann, K. F. D. & Ruers, T. J. M. https://doi.org/10.1016/j.mri.2019.12.008 A cardiomyocyte show of force: A fluorescent alpha-actinin reporter line sheds light on human cardiomyocyte contractility versus substrate stiffness (2020) Journal of molecular and cellular cardiology, 141 , 54-64 . Ribeiro, M. C. , Slaats, R. H. , Schwach, V. , Rivera Arbelaez, J. M. , Tertoolen, L. G. J. , van Meer, B. J. , Molenaar, R. , Mummery, C. L. , Claessens, M. M. A. E. & Passier, R. https://doi.org/10.1016/j.yjmcc.2020.03.008 Ultrasound aids in intraoperative assessment of deep resection margins of squamous cell carcinoma of the tongue (2020) British journal of oral & maxillofacial surgery, 58(3) , 285-290 . Brouwer de Koning, S. G. , Karakullukcu, M. B. , Lange, C. A. H. , Schreuder, W. H. , Karssemakers, L. H. E. & Ruers, T. J. M. https://doi.org/10.1016/j.bjoms.2019.11.013 The clinical implementation of optical spectroscopy in colorectal cancer surgery (2020) [Thesis › PhD Thesis - Research UT, graduation UT] . University of Twente . Baltussen, E. J. M. https://doi.org/10.3990/1.9789036549615 Quantitative Determination of Dark Chromophore Population Explains the Apparent Low Quantum Yield of Red Fluorescent Proteins (2020) The Journal of physical chemistry B, 124(8) , 1383-1391 . Prangsma, J. C. , Molenaar, R. , Van Weeren, L. , Bindels, D. S. , Haarbosch, L. , Stouthamer, J. , Gadella, T. W. J. , Subramaniam, V. , Vos, W. L. & Blum, C. https://doi.org/10.1021/acs.jpcb.9b10396 Accuracy assessment of target tracking using two 5-degrees-of-freedom wireless transponders (2020) International journal of computer assisted radiology and surgery, 15(2) , 369-377 . Eppenga, R. , Kuhlmann, K. , Ruers, T. & Nijkamp, J. https://doi.org/10.1007/s11548-019-02088-9 High versus low dose Stereotactic Body Radiation Therapy for hepatic metastases (2020) Clinical and Translational Radiation Oncology, 20 , 45-50 . Kok, E. N. D. , Jansen, E. P. M. , Heeres, B. C. , Kok, N. F. M. , Janssen, T. , van Werkhoven, E. , Sanders, F. R. K. , Ruers, T. J. M. , Nowee, M. E. & Kuhlmann, K. F. D. https://doi.org/10.1016/j.ctro.2019.11.004 MR-to-US Registration Using Multiclass Segmentation of Hepatic Vasculature with a Reduced 3D U-Net (2020) In Medical Image Computing and Computer Assisted Intervention – MICCAI 2020 - 23rd International Conference, Proceedings (pp. 275-284) (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 12263 LNCS) . Springer . Thomson, B. R. , Smit, J. N. , Ivashchenko, O. V. , Kok, N. F. M. , Kuhlmann, K. F. D. , Ruers, T. J. M. & Fusaglia, M. https://doi.org/10.1007/978-3-030-59716-0_27

2019

Molecular Mechanisms and Genetics of Oxidative Stress in Alzheimer's Disease (2019) Journal of Alzheimer's Disease, 72(4) , 981-1017 . Cioffi, F. , Adam, R. H. I. & Broersen, K. https://doi.org/10.3233/JAD-190863 α-Synuclein Penetrates Mucin Hydrogels despite Its Mucoadhesive Properties (2019) Biomacromolecules, 20(12) , 4332-4344 . Marczynski, M. , Rickert, C. A. , Semerdzhiev, S. A. , van Dijk, W. R. , Segers-Nolten, I. M. J. , Claessens, M. M. A. E. & Lieleg, O. https://doi.org/10.1021/acs.biomac.9b00905 Optimizing algorithm development for tissue classification in colorectal cancer based on diffuse reflectance spectra (2019) Biomedical optics express, 10(12) , 6096-6113 . Baltussen, E. J. M. , Sterenborg, H. J. C. M. , Ruers, T. J. M. & Dashtbozorg, B. https://doi.org/10.1364/BOE.10.006096 Overcharging and charge inversion: Finding the correct explanation(s) (2019) Advances in colloid and interface science, 274 . Article 102040 . de Vos, W. M. & Lindhoud, S. https://doi.org/10.1016/j.cis.2019.102040 Shaping membranes with disordered proteins (2019) Archives of biochemistry and biophysics, 677 . Article 108163 . Fakhree, M. A. A. , Blum, C. & Claessens, M. M. A. E. https://doi.org/10.1016/j.abb.2019.108163 Influence of neoadjuvant chemotherapy on diffuse reflectance spectra of tissue in breast surgery specimens (2019) Journal of biomedical optics, 24(11) . Article 115004 . De Boer, L. L. , Kho, E. , Józwiak, K. , van de Vijver, K. K. , Vrancken Peeters, M. J. T. F. D. , van Duijnhoven, F. , Hendriks, B. H. W. , Sterenborg, H. J. C. M. & Ruers, T. J. M. https://doi.org/10.1117/1.JBO.24.11.115004 Intrinsically disordered protein as carbon nanotube dispersant: How dynamic interactions lead to excellent colloidal stability (2019) Journal of colloid and interface science, 556 , 172-179 . Chaudhary, H. , Fernandes, R. M. F. , Gowda, V. , Claessens, M. M. A. E. , Furó, I. & Lendel, C. https://doi.org/10.1016/j.jcis.2019.08.050 Imaging depth variations in hyperspectral imaging: Development of a method to detect tumor up to the required tumor-free margin width (2019) Journal of biophotonics, 12(11) . Article e201900086 . Kho, E. , de Boer, L. L. , Post, A. L. , van de Vijver, K. K. , Jóźwiak, K. , Sterenborg, H. J. C. M. & Ruers, T. J. M. https://doi.org/10.1002/jbio.201900086 The oral cavity tumor thickness: Measurement accuracy and consequences for tumor staging (2019) European journal of surgical oncology, 45(11) , 2131-2136 . Brouwer de Koning, S. G. , Karakullukcu, M. B. , Lange, C. A. H. & Ruers, T. J. M. https://doi.org/10.1016/j.ejso.2019.06.005 Charge-Based Separation of Proteins Using Polyelectrolyte Complexes as Models for Membraneless Organelles (2019) Biomacromolecules, 20(10) , 3696-3703 . van Lente, J. J. , Claessens, M. M. A. E. & Lindhoud, S. https://doi.org/10.1021/acs.biomac.9b00701 Tissue diagnosis during colorectal cancer surgery using optical sensing: An in vivo study (2019) Journal of translational medicine, 17(1) . Article 333 . Baltussen, E. J. M. , Brouwer De Koning, S. G. , Sanders, J. , Aalbers, A. G. J. , Kok, N. F. M. , Beets, G. L. , Hendriks, B. H. W. , Sterenborg, H. J. C. M. , Kuhlmann, K. F. D. & Ruers, T. J. M. https://doi.org/10.1186/s12967-019-2083-0 Investigation into the molecular complexity of Alzheimer's disease: an amyloid-ß centered approach (2019) [Thesis › PhD Thesis - Research UT, graduation UT] . University of Twente . Cioffi, F. https://doi.org/10.3990/1.9789036548410 Broadband hyperspectral imaging for breast tumor detection using spectral and spatial information (2019) Biomedical optics express, 10(9) , 4496-4515 . Kho, E. , Dashtbozorg, B. , de Boer, L. L. , van de Vijver, K. K. , Sterenborg, H. J. C. M. & Ruers, T. J. M. https://doi.org/10.1364/BOE.10.004496 Morphing of liquid crystal surfaces by emergent collectivity (2019) Nature communications, 10(1) . Article 3501 . van der Kooij, H. M. , Semerdzhiev, S. A. , Buijs, J. , Broer, D. J. , Liu, D. & Sprakel, J. https://doi.org/10.1038/s41467-019-11501-5 Hepatic vessel segmentation using a reduced filter 3D U-Net in ultrasound imaging (2019) [Contribution to conference › Abstract] 2nd International Conference on Medical Imaging with Deep Learning, MIDL 2019 . Thomson, B. R. , Nijkamp, J. , Ivashchenko, O. , Heijden, F. v. d. , Smit, J. N. , Kok, N. F. M. , Kuhlmann, K. F. D. , Ruers, T. J. M. & Fusaglia, M. https://arxiv.org/abs/1907.08612 Method for coregistration of optical measurements of breast tissue with histopathology: the importance of accounting for tissue deformations (2019) Journal of biomedical optics, 24(7) , 1-12 . Article 075002 . de Boer, L. L. , Kho, E. , Nijkamp, J. , van de Vijver, K. K. , Sterenborg, H. J. C. M. , ter Beek, L. C. & Ruers, T. J. M. https://doi.org/10.1117/1.JBO.24.7.075002 Hyperspectral imaging for resection margin assessment during cancer surgery (2019) Clinical cancer research, 25(12) , 3572-3580 . Kho, E. , de Boer, L. L. , van de Vijver, K. K. , van Duijnhoven, F. , Vrancken Peeters, M.-J. T. F. D. , Sterenborg, H. J. C. M. & Ruers, T. J. M. https://doi.org/10.1158/1078-0432.CCR-18-2089 Apolipoprotein E associated with reconstituted high-density lipoprotein-like particles is protected from aggregation (2019) FEBS letters, 593(11) , 1144-1153 . Hubin, E. , Verghese, P. B. , van Nuland, N. & Broersen, K. https://doi.org/10.1002/1873-3468.13428 Detecting breast cancer tissue with diffuse reflectance spectroscopy (2019) [Thesis › PhD Thesis - Research external, graduation UT] . University of Twente . de Boer, L. L. https://doi.org/10.3990/1.9789463803274 Colorectal liver metastases: spectroscopy, immune response and radiofrequency ablation (2019) [Thesis › PhD Thesis - Research external, graduation UT] . University of Twente . Tanis, E. https://doi.org/10.3990/1.9789036547567 Disruptive membrane interactions of alpha-synuclein aggregates (2019) Biochimica et biophysica acta : proteins and proteomics, 1867(5) , 468-482 . Iyer, A. & Claessens, M. M. A. E. https://doi.org/10.1016/j.bbapap.2018.10.006 Photonic emitter manipulation to sample nanoscale topography (2019) Optics express, 27(8) , 11698-11708 . Mateos, N. , Molenaar, R. , Claessens, M. M. A. E. & Blum, C. https://doi.org/10.1364/OE.27.011698 A dual stream network for tumor detection in hyperspectral images (2019) In IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019) (pp. 1256-1259) . Article 8759566 . IEEE . Weijtmans, P. J. C. , Shan, C. , Tan, T. , Brouwer De Koning, S. G. & Ruers, T. J. M. https://doi.org/10.1109/ISBI.2019.8759566 Surgical removal of the index node marked using magnetic seed localization to assess response to neoadjuvant immunotherapy in patients with stage III melanoma (2019) British journal of surgery, 106(5) , 519-522 . Schermers, B. , Franke, V. , Rozeman, E. A. , van de Wiel, B. A. , Bruining, A. , Wouters, M. W. , van Houdt, W. J. , ten Haken, B. , Muller, S. H. , Bierman, C. , Ruers, T. J. M. , Blank, C. U. & van Akkooi, A. C. J. https://doi.org/10.1002/bjs.11168 Prospective study on image-guided navigation surgery for pelvic malignancies (2019) Journal of Surgical Oncology, 119(4) , 510-517 . Nijkamp, J. , Kuhlmann, K. F. D. , Ivashchenko, O. , Pouw, B. , Hoetjes, N. , Lindenberg, M. A. , Aalbers, A. G. J. , Beets, G. L. , van Coevorden, F. , KoK, N. & Ruers, T. J. M. https://doi.org/10.1002/jso.25351 Cooperation of Helix Insertion and Lateral Pressure to Remodel Membranes (2019) Biomacromolecules, 20(3) , 1217-1223 . Fakhree, M. A. A. , Engelbertink, S. A. J. , Van Leijenhorst-Groener, K. A. , Blum, C. & Claessens, M. M. A. E. https://doi.org/10.1021/acs.biomac.8b01606 Data from: Exogenous α-synuclein hinders synaptic communication in cultured cortical primary rat neurons (2019) [Dataset Types › Dataset] . Zenodo . Hassink, G. C. , Raiss, C. C. , Segers-Nolten, I. , van Wezel, R. J. A. , Subramaniam, V. , le Feber, J. & Claessens, M. M. A. E. https://doi.org/10.5061/dryad.m7fk370 Lipid-Conjugated Rigidochromic Probe Discloses Membrane Alteration in Model Cells of Krabbe Disease (2019) Biophysical journal, 116(3) , 477-486 . Abbandonato, G. , Storti, B. , Tonazzini, I. , Stöckl, M. , Subramaniam, V. , Montis, C. , Nifosì, R. , Cecchini, M. , Signore, G. & Bizzarri, R. https://doi.org/10.1016/j.bpj.2018.11.3141 Benzodifurans for biomedical applications: BZ4, a selective anti-proliferative and anti-amyloid lead compound (2019) Future Medicinal Chemistry, 11(4) , 285-302 . Vicidomini, C. , Cioffi, F. , Broersen, K. , Roviello, V. , Riccardi, C. , Montesarchio, D. , Capasso, D. , Gaetano, S. D. , Musumeci, D. & Roviello, G. N. https://doi.org/10.4155/fmc-2018-0473 Intraoperative verification of resection margins of maxillary malignancies by cone-beam computed tomography (2019) British journal of oral & maxillofacial surgery, 57(2) , 174-181 . Ivashchenko, O. , Pouw, B. , de Witt, J. K. , Koudounarakis, E. , Nijkamp, J. , van Veen, R. L. P. , Ruers, T. J. M. & Karakullukcu, B. M. https://doi.org/10.1016/j.bjoms.2019.01.007 Hyperspectral imaging for tissue classification, a way toward smart laparoscopic colorectal surgery (2019) Journal of biomedical optics, 24(1) , 1-9 . Article 016002 . Baltussen, E. J. M. , Kok, E. N. D. , Brouwer de Koning, S. G. , Sanders, J. , Aalbers, A. G. J. , Kok, N. F. M. , Beets, G. L. , Flohil, C. C. , Bruin, S. C. , Kuhlmann, K. F. D. , Sterenborg, H. J. C. M. & Ruers, T. J. M. https://doi.org/10.1117/1.JBO.24.1.016002 Automated tumor assessment of squamous cell carcinoma on tongue cancer patients with hyperspectral imaging (2019) In Medical Imaging 2019: Image-Guided Procedures, Robotic Interventions, and Modeling . Article 109512K (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; Vol. 10951) . SPIE . Manni, F. , Van Der Sommen, F. , Zinger, S. , Kho, E. , Brouwer De Koning, S. , Ruers, T. , Shan, C. , Schleipen, J. & De With, P. H. N. https://doi.org/10.1117/12.2512238

2018

Towards the use of diffuse reflectance spectroscopy for real-time in vivo detection of breast cancer during surgery (2018) Journal of translational medicine, 16(1) . Article 367 . De Boer, L. L. , Bydlon, T. M. , Van Duijnhoven, F. , Vranken Peeters, M. J. T. F. D. , Loo, C. E. , Winter-Warnars, G. A. O. , Sanders, J. , Sterenborg, H. J. C. M. , Hendriks, B. H. W. & Ruers, T. J. M. https://doi.org/10.1186/s12967-018-1747-5 The Extraction and Recovery of Volatile Fatty Acids with a Complex Coacervate (2018) [Contribution to conference › Poster] 6th CHemistry As INnovating Science Conference, CHAINS 2018 . Brouwer, T. , Oosterhoff, R. , Engelen, T. & Lindhoud, S. Accuracy assessment of wireless transponder tracking in the operating room environment (2018) International journal of computer assisted radiology and surgery, 13(12) , 1937-1948 . Eppenga, R. , Kuhlmann, K. , Ruers, T. & Nijkamp, J. https://doi.org/10.1007/s11548-018-1838-z Searching for improved mimetic peptides inhibitors preventing conformational transition of amyloid-β₄₂ monomer (2018) Bioorganic Chemistry, 81 , 211-221 . Gera, J. , Szögi, T. , Bozsó, Z. , Fülöp, L. , Barrera, E. E. , Rodriguez, A. M. , Méndez, L. , Delpiccolo, C. M. L. , Mata, E. G. , Cioffi, F. , Broersen, K. , Paragi, G. & Enriz, R. D. https://doi.org/10.1016/j.bioorg.2018.08.018 Functional Insights into Membrane Bound α-Synuclein: Surface Density, Conformation, and Localization inside Cells (2018) [Thesis › PhD Thesis - Research UT, graduation UT] . University of Twente . Abolghassemi Fakhree, M. A. https://doi.org/10.3990/1.9789463233675 Annealing of Polyelectrolyte Multilayers for Control over Ion Permeation (2018) Advanced materials interfaces, 5(20) . Article 1800651 . Reurink, D. M. , Haven, J. P. , Achterhuis, I. , Lindhoud, S. , Roesink, (. H. D. W. & de Vos, W. M. https://doi.org/10.1002/admi.201800651 Optical tissue identification: weefseldifferentiatie met behulp van licht (2018) [Thesis › PhD Thesis - Research external, graduation UT] . University of Twente . Langhout, G. C. https://doi.org/10.3990/1.9789402811940 Toward complete oral cavity cancer resection using a handheld diffuse reflectance spectroscopy probe (2018) Journal of biomedical optics, 23(12) , 1-8 . Article 121611 . Brouwer de Koning, S. G. , Baltussen, E. J. M. , Karakullukcu, M. B. , Dashtbozorg, B. , Smit, L. A. , Dirven, R. , Hendriks, B. H. W. , Sterenborg, H. J. C. M. & Ruers, T. J. M. https://doi.org/10.1117/1.JBO.23.12.121611 Biophysical characterization of CD6 - TCR/CD3 Interplay in T Cells (2018) Frontiers in Immunology, 9(OCT) . Article 2333 . Meddens, M. B. M. , Mennens, S. F. B. , Celikkol, F. B. , te Riet, J. , Kanger, J. S. , Joosten, B. , Witsenburg, J. J. , Brock, R. , Figdor, C. G. & Cambi, A. https://doi.org/10.3389/fimmu.2018.02333 In vivo nerve identification in head and neck surgery using diffuse reflectance spectroscopy (2018) Laryngoscope Investigative Otolaryngology, 3(5) , 349-355 . Langhout, G. C. , Kuhlmann, K. F. D. , Schreuder, P. , Bydlon, T. , Smeele, L. E. , van den Brekel, M. W. M. , Sterenborg, H. J. C. M. , Hendriks, B. H. W. & Ruers, T. J. M. https://doi.org/10.1002/lio2.174 Biocompatible single-chain polymer nanoparticles for drug deliverya dual approach (2018) ACS Applied Materials & Interfaces, 10(37) , 30946-30951 . Kröger, A. P. P. , Hamelmann, N. M. , Juan, A. , Lindhoud, S. & Paulusse, J. M. J. https://doi.org/10.1021/acsami.8b07450 Optimization of an implantable magnetic marker for surgical localization of breast cancer (2018) Biomedical Physics & Engineering Express, 4(6) . Article 067001 . Schermers, B. , Ten Haken, B. , Muller, S. H. , Van Der Hage, J. A. & Ruers, T. J. M. https://doi.org/10.1088/2057-1976/aadb53 Tumor Resection Margin Definitions in Breast-Conserving Surgery: Systematic Review and Meta-analysis of the Current Literature (2018) Clinical breast cancer, 18(4) , e595-e600 . Brouwer de Koning, S. G. , Vrancken Peeters, M. J. T. F. D. , Jóźwiak, K. , Bhairosing, P. A. & Ruers, T. J. M. https://doi.org/10.1016/j.clbc.2018.04.004 Polymorph-specific distribution of binding sites determines thioflavin-T fluorescence intensity in α-synuclein fibrils (2018) Amyloid : the international journal of experimental and clinical investigation : the official journal of the International Society of Amyloidosis, 25(3) , 189-196 . Sidhu, A. , Vaneyck, J. , Blum, C. , Segers-Nolten, I. & Subramaniam, V. https://doi.org/10.1080/13506129.2018.1517736 TEMPO-oxidised cellulose nanofibrils; Probing the mechanisms of gelation: Via small angle X-ray scattering (2018) Physical chemistry chemical physics, 20(23) , 16012-16020 . Schmitt, J. , Calabrese, V. , Da Silva, M. A. , Lindhoud, S. , Alfredsson, V. , Scott, J. L. & Edler, K. J. https://doi.org/10.1039/c8cp00355f Lipidated apolipoprotein E4 structure and its receptor binding mechanism determined by a combined cross-linking coupled to mass spectrometry and molecular dynamics approach (2018) PLoS Computational Biology, 14(6) . Article e1006165 . Henry, N. , Krammer, E. M. , Stengel, F. , Adams, Q. , Van Liefferinge, F. , Hubin, E. , Chaves, R. , Efremov, R. , Aebersold, R. , Vandenbussche, G. , Prévost, M. , Raussens, V. & Deroo, S. https://doi.org/10.1371/journal.pcbi.1006165 Oligonucleotide Length-Dependent Formation of Virus-Like Particles (2018) Chemistry : a European journal, 24(29) , 7456-7463 . Maassen, S. J. , de Ruiter, M. V. , Lindhoud, S. & Cornelissen, J. J. L. M. https://doi.org/10.1002/chem.201800285 Hydrophobic-Interaction-Induced Stiffening of α-Synuclein Fibril Networks (2018) Physical review letters, 120(20) . Article 208102 . Semerdzhiev, S. A. , Lindhoud, S. , Stefanovic, A. , Subramaniam, V. , van der Schoot, P. & Claessens, M. M. A. E. https://doi.org/10.1103/PhysRevLett.120.208102 Floating and Tether-Coupled Adhesion of Bacteria to Hydrophobic and Hydrophilic Surfaces (2018) Langmuir, 34(17) , 4937-4944 . van der Westen, R. , Sjollema, J. , Molenaar, R. , Sharma, P. K. , van der Mei, H. C. & Busscher, H. J. https://doi.org/10.1021/acs.langmuir.7b04331 Nerve detection during surgery: optical spectroscopy for peripheral nerve localization (2018) Lasers in medical science, 33(3) , 619-625 . Langhout, G. C. , Kuhlmann, K. F. D. , Wouters, M. W. J. M. , van der Hage, J. A. , van Coevorden, F. , Müller, M. , Bydlon, T. M. , Sterenborg, H. J. C. M. , Hendriks, B. H. W. & Ruers, T. J. M. https://doi.org/10.1007/s10103-017-2433-1 Quantification of intracranial aneurysm volume pulsation with 7TMRI (2018) American journal of neuroradiology, 39(4) , 713-719 . Kleinloog, R. , Zwanenburg, J. J. M. , Schermers, B. , Krikken, E. , Ruigrok, Y. M. , Luijten, P. R. , Visser, F. , Regli, L. , Rinkel, G. J. E. & Verweij, B. H. https://doi.org/10.3174/ajnr.A5546 Real-time wireless tumor tracking during breast conserving surgery (2018) International journal of computer assisted radiology and surgery, 13(4) , 531-539 . Janssen, N. , Eppenga, R. , Vrancken Peeters, M.-J. , van Duijnhoven, F. , Oldenburg, H. , van der Hage, J. , Rutgers, E. , Sonke, J.-J. , Kuhlmann, K. , Ruers, T. J. M. & Nijkamp, J. https://doi.org/10.1007/s11548-017-1684-4 Exogenous α-synuclein hinders synaptic communication in cultured cortical primary rat neurons (2018) PLoS ONE, 13(3) . Article e0193763 . Hassink, G. C. , Raiss, C. C. , Segers-Nolten, I. M. J. , van Wezel, R. J. A. , Subramaniam, V. , le Feber, J. & Claessens, M. M. A. E. https://doi.org/10.1371/journal.pone.0193763 Different Conformational Subensembles of the Intrinsically Disordered Protein α-Synuclein in Cells (2018) The journal of physical chemistry letters, 9(6) , 1249-1253 . Fakhree, M. A. A. , Nolten, I. S. , Blum, C. & Claessens, M. M. A. E. https://doi.org/10.1021/acs.jpclett.8b00092 Nerve detection using optical spectroscopy, an evaluation in four different models: In human and swine, in-vivo, and post mortem (2018) Lasers in surgery and medicine, 50(3) , 253-261 . Langhout, G. C. , Bydlon, T. M. , van der Voort, M. , Müller, M. , Kortsmit, J. , Lucassen, G. , Balthasar, A. J. R. , van Geffen, G.-J. , Steinfeldt, T. , Sterenborg, H. J. C. M. , Hendriks, B. H. W. & Ruers, T. J. M. https://doi.org/10.1002/lsm.22755 Orthogonal supramolecular protein assembly on patterned bifunctional surfaces (2018) Chemical communications, 54(13) , 1615-1618 . Wasserberg, D. , Cabanas-Danés, J. , Subramaniam, V. , Huskens, J. & Jonkheijm, P. https://doi.org/10.1039/c7cc09808a Spermine induced reversible collapse of deoxyribonucleic acid-bridged nanoparticle-based assemblies (2018) Nano research, 11(1) , 383-396 . Göeken, K. L. , Schasfoort, R. B. M. , Subramaniam, V. & Gill, R. https://doi.org/10.1007/s12274-017-1641-0 Structural and aggregation properties of Alpha-Synuclein linked to phospholipase A2 action (2018) Protein and Peptide Letters, 25(4) , 368-378 . Broersen, K. , Ruipérez, V. & Davletov, B. https://doi.org/10.2174/0929866525666180326120052

2017

2016

2015

Learning curve and interobserver variance in quantification of the optical coherence tomography attenuation coefficient (2015) Journal of biomedical optics, 20(12) . Article 121313 . Wessels, R. , de Bruin, D. M. , Faber, D. J. , Sanders, J. , Vincent, A. D. , van Beurden, M. , van Leeuwen, T. G. & Ruers, T. J. M. https://doi.org/10.1117/1.JBO.20.12.121313 Studying the blood-brain barrier on a microfluidic chip (2015) [Contribution to conference › Abstract] In Vitro Toxicology Society Annual Meeting . van der Helm, M. W. , Broersen, K. , van der Meer, A. D. , Eijkel, J. C. T. , van den Berg, A. & Segerink, L. I. https://doi.org/10.1089/aivt.2015.29000.abstracts Supporting data of spatiotemporal proliferation of human stromal cells adjusts to nutrient availability and leads to stanniocalcin-1 expression in vitro and in vivo (2015) Data in brief, 5 , 84-94 . Higuera Sierra, G. , Fernandes, H. , Spitters, T. , van de Peppel, J. , Auffermann, N. , Truckenmüller, R. , Escalante, M. , Stoop, R. , van Leeuwen, J. P. , de Boer, J. , Subramaniam, V. , Karperien, M. , van Blitterswijk, C. , van Boxtel, A. & Moroni, L. https://doi.org/10.1016/j.dib.2015.08.012 Spectral tissue sensing for guidance and monitoring in oncological procedures (2015) [Thesis › PhD Thesis - Research external, graduation UT] . University of Twente . Spliethoff, J. W. https://doi.org/10.3990/1.9789462599024 Studying the blood-brain barrier on a microfluidic chip for drug development, pathology and toxicology (2015) [Contribution to conference › Poster] Annual meeting of the UK In Vitro Toxicological Society 2015 . van der Helm, M. W. , Broersen, K. , van der Meer, A. D. , Eijkel, J. C. T. , van den Berg, A. & Segerink, L. I. Parkinson's protein α-synuclein binds efficiently and with a novel conformation to two natural membrane mimics (2015) PLoS ONE, 10(11) . Article e0142795 . Kumar, P. , Segers-Nolten, I. M. J. , Schilderink, N. , Subramaniam, V. & Huber, M. https://doi.org/10.1371/journal.pone.0142795 The contribution of capping layer dielectric properties to nanoparticle stability (2015) Colloids and surfaces A: Physicochemical and engineering aspects, 483 , 239-247 . Galanis, J. , Sood, A. , Gill, R. & Harries, D. https://doi.org/10.1016/j.colsurfa.2015.05.015 Mechanisms of membrane disruption by alpha-synuclein aggregates (2015) [Thesis › PhD Thesis - Research UT, graduation UT] . University of Twente . Chaudhary, H. https://doi.org/10.3990/1.9789036539708 How can size-selectivity be added to an integrated Young interferometer biosensor? (2015) [Contribution to conference › Poster] NanoCity 2015 . Mulder, H. , Subramaniam, V. & Kanger, J. S. Structural and immunogenic characterization of differently organized bovine Beta-lactoglobulin aggregates (2015) [Contribution to conference › Poster] 9th NIZO Dairy Conference . Verhoek, I. , Teodorowicz, G. , Wichers, H. & Broersen, K. Characterization of insulin-degrading enzyme-mediated cleavage of Abeta in distinct aggregation stages (2015) [Contribution to conference › Poster] Annual Dutch Meeting on Molecular and Cellular Biophysics, Dutch BioPhysics 2015 . Hubin, E. , Cioffi, F. , Rozenski, J. , van Nuland, N. & Broersen, K. Differentiation of healthy and malignant tissue in colon cancer patients using optical spectroscopy: A tool for image-guided surgery (2015) Lasers in surgery and medicine, 47(7) , 559-565 . Langhout, G. C. , Spliethoff, J. W. , Schmitz, S. J. , Aalbers, A. G. J. , van Velthuysen, M. L. F. , Hendriks, B. H. W. , Ruers, T. J. M. & Kuhlmann, K. F. D. https://doi.org/10.1002/lsm.22388 Fat/water ratios measured with diffuse reflectance spectroscopy to detect breast tumor boundaries (2015) Breast cancer research and treatment, 152(3) , 509-518 . de Boer, L. L. , Molenkamp, B. G. , Bydlon, T. M. , Hendriks, B. H. W. , Wesseling, J. , Sterenborg, H. J. C. M. & Ruers, T. J. M. https://doi.org/10.1007/s10549-015-3487-z Photonic effects on the fluorescence lifetimes of dyes in thin PVA layers (2015) In Nanoimaging and Nanospectroscopy III . Article 95540G . SPIE . Prangsma, J. C. , Molenaar, R. , Subramaniam, V. & Blum, C. https://doi.org/10.1117/12.2190521 MicroRNA Levels as Prognostic Markers for the Differentiation Potential of Human Mesenchymal Stromal Cell Donors (2015) Stem cells and development, 24(16) , 1946-1955 . Georgi, N. , Taipaleenmaki, H. , Raiss, C. C. , Groen, N. , Portalska, K. J. , van Blitterswijk, C. , de Boer, J. , Post, J. N. , van Wijnen, A. J. & Karperien, M. https://doi.org/10.1089/scd.2014.0534 New mimetic peptides inhibitors of Aβ aggregation: Molecular guidance for rational drug design (2015) European journal of medicinal chemistry, 95 , 136-152 . Barrera Guisasola, E. E. , Andujar, S. A. , Hubin, E. , Broersen, K. , Kraan, I. M. , Méndez, L. , Delpiccolo, C. M. L. , Masman, M. F. , Rodríguez, A. M. & Enriz, R. D. https://doi.org/10.1016/j.ejmech.2015.03.042 Spatiotemporal proliferation of human stromal cells adjusts to nutrient availability and leads to stanniocalcin-1 expression in vitro and in vivo (2015) Biomaterials, 61 , 190-202 . Higuera, G. A. , Fernandes, H. , Spitters, T. W. G. M. , van de Peppel, J. , Auffermann, N. , Truckenmüller, R. , Escalante, M. , Stoop, R. , van Leeuwen, J. P. , de Boer, J. , Subramaniam, V. , Karperien, M. , van Blitterswijk, C. , van Boxtel, A. & Moroni, L. https://doi.org/10.1016/j.biomaterials.2015.05.017 Waveguide-coupled micro-ball lens array suitable for mass fabrication (2015) Optics express, 23(17) , 22414-22423 . Chang, L. , Dijkstra, M. , Ismail, N. , Pollnau, M. , de Ridder, R. M. , Wörhoff, K. , Subramaniam, V. & Kanger, J. S. https://doi.org/10.1364/OE.23.022414 The multifactorial character of Alzheimer's disease (2015) [Contribution to conference › Poster] MIRA Institute for Biomedical Technology and Technical Medicine Day . Cioffi, F. , Rodriguez, A. M. , Masman, M. F. , Enriz, R. D. & Broersen, K. Clinical experiences with optical coherence tomography in epithelial (pre)malignancies (2015) [Thesis › PhD Thesis - Research UT, graduation UT] . University of Twente . Wessels, R. https://doi.org/10.3990/1.9789462596818 Alpha-synuclein amyloid oligomers act as multivalent nanoparticles to cause hemifusion in negatively charged vesicles (2015) Small, 11(19) , 2257-2262 . Stefanovic, A. N. D. , Claessens, M. M. A. E. , Blum, C. & Subramaniam, V. https://doi.org/10.1002/smll.201402674 Insights into the function and dysfunction of α-synuclein in cells (2015) [Thesis › PhD Thesis - Research UT, graduation UT] . University of Twente . Raiss, C. C.-M. https://doi.org/10.3990/1.9789461089458 Diffuse reflectance spectroscopy: Toward real-time quantification of steatosis in liver (2015) Transplant international, 28(4) , 465-474 . Evers, D. J. , Westerkamp, A. C. , Spliethoff, J. W. , Pully, V. V. , Hompes, D. , Hendriks, B. H. W. , Prevoo, W. , van Velthuysen, M.-L. F. , Porte, R. J. & Ruers, T. J. M. https://doi.org/10.1111/tri.12517 Functional optical coherence tomography of pigmented lesions (2015) Journal of the European Academy of Dermatology and Venereology, 29(4) , 738-744 . Wessels, R. , de Bruin, D. M. , Relyveld, G. N. , Faber, D. J. , Vincent, A. D. , Sanders, J. , van Leeuwen, T. G. & Ruers, T. J. M. https://doi.org/10.1111/jdv.12673 Nanophotonic measurement of the dark fraction in red fluorescent proteins (2015) [Contribution to conference › Abstract] Focus on Microscopy, FOM 2015 . Prangsma, J. C. , Molenaar, R. , Subramaniam, V. & Blum, C. Direct patterning of nanoparticles and biomolecules by liquid nanodispensing (2015) Nanoscale, 7(10) , 4497-4504 . Fabié, L. , Agostini, P. , Stopel, M. , Blum, C. , Lassagne, B. , Subramaniam, V. & Ondarçuhu, T. https://doi.org/10.1039/c4nr06824f Disease related point mutations and solution conditions determine fibrillization behavior of alpha-synuclein (2015) [Contribution to conference › Poster] 59th Annual Biophysical Society Meeting . Sidhu, A. , Segers-Nolten, G. M. J. & Subramaniam, V. Non-invasive imaging through opaque scattering layers (2015) In Adaptive Optics and Wavefront Control for Biological Systems (pp. 1-7) (Proceedings of SPIE; Vol. 9335) . SPIE . Bertolotti, J. , van Putten, E. G. , Blum, C. , Lagendijk, A. , Vos, W. L. & Mosk, A. P. https://doi.org/10.1117/12.2079525 Fibril breaking accelerates α-synuclein fibrillization (2015) The Journal of physical chemistry B, 119(5) , 1912-1918 . Shvadchak, V. V. , Claessens, M. M. A. E. & Subramaniam, V. https://doi.org/10.1021/jp5111604 Enhancing spectral shifts of plasmon-coupled noble metal nanoparticles for sensing applications (2015) Physical chemistry chemical physics, 17(1) , 422-427 . Göeken, K. L. , Subramaniam, V. & Gill, R. https://doi.org/10.1039/c4cp03739a Fluorescence Methods for Unraveling Oligomeric Amyloid Intermediates (2015) In Protein Amyloid Aggregation: Methods and Protocols (pp. 151-169) (Methods in Molecular Biology) . Springer . Zijlstra, N. , Schilderink, N. & Subramaniam, V. https://doi.org/10.1007/978-1-4939-2978-8_10 Integrated polymer micro-ball lenses for two-dimensional divergence reduction of light from single-mode optical waveguides (2015) In European Conference on Lasers and Electro-Optics, CLEO 2015 . Article 131528 . Optical Society of America . Chang, L. , Dijkstra, M. , de Ridder, R. M. , Worhoff, K. , Subramaniam, V. & Kanger, J. S. Microcantilever based distance control between a probe and a surface (2015) Review of scientific instruments, 86(063706) . Article 063706 . Molenaar, R. , Prangsma, J. , van der Werf, K. , Bennink, M. L. , Blum, C. & Subramaniam, V. https://doi.org/10.1063/1.4922885 Oligomers of Parkinson's Disease-Related α-Synuclein Mutants have Similar Structures but Distinctive Membrane Permeabilization Properties (2015) Biochemistry (USA), 54 , 3142-3150 . Stefanovic, A. N. D. , Lindhoud, S. , Semerdzhiev, S. A. , Claessens, M. M. A. E. & Subramaniam, V. https://doi.org/10.1021/bi501369k Optical coherence tomography accurately identifies patients with penile (pre) malignant lesions: A single center prospective study (2015) Urology Annals, 7(4) , 459-465 . Wessels, R. , de Bruin, D. M. , Faber, D. J. , Horenblas, S. , van Rhijn, B. W. G. , Vincent, A. D. , van Beurden, M. , van Leeuwen, T. G. & Ruers, T. J. M. https://doi.org/10.4103/0974-7796.156147 Studying the blood-brain barrier on a microfluidic chip (2015) [Contribution to conference › Paper] In Vitro Toxicology Society Annual Meeting . McKim, J. M. , van der Helm, M. W. , Broersen, K. , van der Meer, A. D. , Eijkel, J. C. T. , van den Berg, A. & Segerink, L. I. https://doi.org/10.1089/aivt.2015.29000.abstracts The value of optical coherence tomography in determining surgical margins in squamous cell carcinoma of the vulva: A single-center prospective study (2015) International journal of gynecological cancer, 25(1) , 112-118 . Wessels, R. , van Beurden, M. , de Bruin, D. M. , Faber, D. J. , Vincent, A. D. , Sanders, J. , van Leeuwen, T. G. & Ruers, T. J. M. https://doi.org/10.1097/IGC.0000000000000310 Three Long-Range Distance Constraints and an Approach Towards a Model for the α-Synuclein-Fibril Fold (2015) Applied Magnetic Resonance, 46(4) , 369-388 . Hashemi Shabestari, M. , Kumar, P. , Segers-Nolten, I. M. J. , Claessens, M. M. A. E. , van Rooijen, B. D. , Subramaniam, V. & Huber, M. https://doi.org/10.1007/s00723-014-0622-7 Two distinct ß-sheet structures in Italian-mutant amyloid-beta fibrils: a potential link to different clinical phenotypes (2015) Cellular and Molecular Life Sciences, 72(24) , 4899-4913 . Hubin, E. , Deroo, S. , Schierle, G. K. , Kaminski, C. , Serpell, L. , Subramaniam, V. , Van Nuland, N. , Broersen, K. , Raussens, V. & Sarroukh, R. https://doi.org/10.1007/s00018-015-1983-2

2014

2013

Size-selective detection in an integrated optical Young interferometer biosensor (2013) [Contribution to conference › Poster] MicroNanoConference 2013 . Mulder, H. , Subramaniam, V. & Kanger, J. S. Surface modification of electrospun fibre meshes by oxygen plasma for bone regeneration (2013) Biofabrication, 5(1) , - . Article 015006 . Nandakumar, A. , Tahmasebi Birgani, Z. , Reis Santos, D. , Mentink-Leusink, A. , Auffermann, N. , van der Werf, K. , Bennink, M. L. , Moroni, L. , van Blitterswijk, C. & Habibovic, P. https://doi.org/10.1088/1758-5082/5/1/015006 Discrimination of protein binding from bulk changes in a Young interferometer biosensor (2013) [Contribution to conference › Poster] NanoNextNL NanoMedicine 2013 . Mulder, H. & Kanger, J. S. Fabrication of gold-nanoparticle arrays using photolithography and thermal dewetting (2013) In 17th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS (pp. 1418-1420) (MicroTAS) . The Priniting House . de Vreede, L. , Göeken, K. , Gill, R. , van den Berg, A. & Eijkel, J. C. T. http://eprints.eemcs.utwente.nl/secure2/24050/01/475_0420.pdf Blinking statistics of colloidal quantum dots at different excitation wavelengths (2013) RSC advances, 3(38) , 17440-17445 . Stopel, M. H. W. , Prangsma, J. C. , Blum, C. & Subramaniam, V. https://doi.org/10.1039/c3ra43637c Fast, single-step, and surfactant-free oligonucleotide modification of gold nanoparticles using DNA with a positively charged tail (2013) Chemical communications, 49(97) , 11400-11402 . Gill, R. , Göeken, K. & Subramaniam, V. https://doi.org/10.1039/c3cc47138a Antiparallel beta-sheet architecture of italian-mutant amyloid-beta fibrils (2013) [Contribution to conference › Poster] TN2 Conference on Alzheimer's disease and related disorders . Hubin, E. , Sarroukh, R. , de Roo, S. , Raussens, V. , van Nuland, N. & Broersen, K. Massive parallel characterization of resonant metal nanostructures (2013) [Contribution to conference › Poster] 37th Annual meeting NNV AMO Lunteren 2013 . Mak, J. , Dikken, D. J. W. , Segerink, F. B. , Prangsma, J. & Herek, J. L. http://www.ru.nl/amolunteren/ Alpha-synuclein oligomers distinctively permeabilize model plasma and mitochondrial membranes (2013) [Contribution to conference › Poster] Annual Dutch meeting on Molecular and Cellular Biophysics 2013 . Stefanovic, A. , Claessens, M. M. A. E. & Subramaniam, V. Amyloid Scaffolds for Cartilage Tissue Engineering: The Effect of Amyloid Structures on Cell Viability and Proliferation (2013) [Contribution to conference › Poster] Annual Dutch meeting on Molecular and Cellular Biophysics 2013 . van Dalen, M. C. E. , Karperien, H. B. J. , Subramaniam, V. , Post, J. N. & Claessens, M. M. A. E. Hierarchical self-assembly of alpha-synuclein. The formation of higher order structures by the neuronal protein alpha-synuclein: self-assembly over multiple length scales (2013) [Contribution to conference › Poster] Annual Dutch meeting on Molecular and Cellular Biophysics 2013 . Semerdzhiev, S. A. , Dekker, D. R. , Subramaniam, V. & Claessens, M. M. A. E. Antiparallel beta-sheet architecture of italian-mutant amyloid-beta fibrils (2013) [Contribution to conference › Poster] Spetsai Summer School on Protein Interactions, assesmblies and human disease . Hubin, E. , Sarroukh, R. , de Roo, S. , Raussens, V. , van Nuland, N. & Broersen, K. Facilities at MESA+ BioNanoLab (2013) [Contribution to conference › Poster] MESA+ Meeting 2013 . Segers-Nolten, G. M. J. Optical nanoscopy to study protein aggregation: function versus toxicity (2013) [Contribution to conference › Poster] MESA+ Meeting 2013 . Zijlstra, N. , Raiss, C. C. , Siemerink-Konings, I. , Chaudhary, H. , Subramaniam, V. , Blum, C. & Claessens, M. M. A. E. Self-assembled amyloid nanostructures as scaffolds for creating photonic and electronic assemblies (2013) [Contribution to conference › Poster] MESA+ Meeting 2013 . Sidhu, A. , Segers-Nolten, G. M. J. & Subramaniam, V. Hierarchical self-assembly of alpha-synuclein (2013) [Contribution to conference › Poster] 3rd International Soft Matter Conference, ISMC 2013 . Semerdzhiev, S. A. , Dekker, D. R. , Lindhoud, S. , Subramaniam, V. & Claessens, M. M. A. E. α-Synuclein oligomers: an amyloid pore? Insights into mechanisms of alpha-synuclein oligomer-lipid interactions (2013) Molecular neurobiology, 47(2) , 613-621 . Stöckl, M. T. , Zijlstra, N. & Subramaniam, V. https://doi.org/10.1007/s12035-012-8331-4 Hierarchical self-assembly of alpha-synuclein. The formation of higher order structures by the neuronal protein alpha-synuclein: self-assembly over multiple length scales (2013) [Contribution to conference › Poster] Gordon Research Seminar on Soft Condensed Matter Physics . Semerdzhiev, S. A. , Dekker, D. R. , Subramaniam, V. & Claessens, M. M. A. E. Shining light on amyloid protein aggregates: Single-molecule photobleaching of sub-stoichiometrically labeled alpha-synuclein oligomers reveals the aggregation number (2013) [Contribution to conference › Poster] 9th European Biophysics Congress, EBSA 2013 . Zijlstra, N. , Segers-Nolten, G. M. J. , Claessens, M. M. A. E. , Blum, C. & Subramaniam, V. Alpha-synuclein fibrillization plays essential role in membrane disruption (2013) [Contribution to conference › Poster] 9th European Biophysics Congress, EBSA 2013 . Chaudhary, H. , Subramaniam, V. & Claessens, M. M. A. E. Alpha-synuclein oligomers distinctively permeabilize model plasma and mitochondrial membranes (2013) [Contribution to conference › Poster] 9th European Biophysics Congress, EBSA 2013 . Stefanovic, A. , Stöckl, M. T. , Claessens, M. M. A. E. & Subramaniam, V. Intra-laser-cavity microparticle sensing with a dual-wavelength distributed-feedback laser (2013) Laser & photonics reviews, 7(4) , 589-595 . Bernhardi, E. , van der Werf, K. , Hollink, A. , Worhoff, K. , de Ridder, R. M. , Subramaniam, V. & Pollnau, M. https://doi.org/10.1002/lpor.201200111 Localized surface plasmon resonance based sensing for pathogen detection (2013) [Contribution to conference › Poster] FEBS: Biological surfaces and interfaces . Göeken, K. , Gill, R. & Subramaniam, V. Imaging Through Scattering Media (2013) In Optics InfoBase Conference Papers 2013 (pp. P1-3) . Article 104495 . Optical Society of America . Bertolotti, J. , van Putten, E. G. , Blum, C. , Lagendijk, A. , Vos, W. L. & Mosk, A. http://www.scopus.com/inward/record.url?scp=84898634247&partnerID=8YFLogxK Self assembled amyloid nanostructures as scaffold for creating photonic and electronic assemblies (2013) [Contribution to conference › Poster] Workshop on Electronically Active Interphases . Sidhu, A. , Segers-Nolten, G. M. J. & Subramaniam, V. Motor failure in neurodegenerative disease (2013) [Contribution to conference › Poster] NanoNextNL Bio-Nano Theme Day 2013 . Lindhoud, S. & Claessens, M. M. A. E. Using Magnetic Probes to Study Receptor Clustering (2013) [Contribution to conference › Poster] MIRA Midterm Evaluation 2013 . Celikkol, B. , Cambi, A. , Figdor, C. , Subramaniam, V. & Kanger, J. S. Intra-operative ex vivo photoacoustic nodal staging in a rat model using a clinical superparamagnetic iron oxide nanoparticle dispersion (2013) Journal of biophotonics, 6(6-7) , 493-504 . Grootendorst, D. , Fratila, R. M. , Visscher, M. , ten Haken, B. , van Wezel, R. J. A. , Rottenberg, S. , Steenbergen, W. , Manohar, S. & Ruers, T. J. M. https://doi.org/10.1002/jbio.201200204 Candles, Committees, and Nobility: The Future of Nanoscale Biological Sciences (2013) [Book/Report › Inaugural speech] . University of Twente . Petersen, N. O. Dimerisation states in EGF receptor family upon interactions with therapeutic drugs studied by single molecule tracking (2013) [Contribution to conference › Poster] ICREA Conference . Bosch, P. J. , Kanger, J. S. & Subramaniam, V. Emission enhancement and lifetime modification of phosphorescence on silver nanoparticle aggregates (2013) Physical chemistry chemical physics, 15(38) , 15734-15739 . Gill, R. , Tian, L. , van Amerongen, H. & Subramaniam, V. https://doi.org/10.1039/C3CP50407G On-chip microparticle detection and sizing using a dual-wavelength waveguide laser (2013) [Contribution to conference › Abstract] 2013 Conference on Lasers and Electro-Optics Europe and International Quantum Electronics Conference, CLEO/Europe-IQEC 2013 . Bernhardi, E. , van der Werf, K. , Hollink, A. , Worhoff, K. , de Ridder, R. M. , Subramaniam, V. & Pollnau, M. http://eprints.eemcs.utwente.nl/secure2/23346/01/CLEO_2013_cl-p.9-sun_Bernhardi.pdf Insights into solvent dependent alpha-synuclein fibrillization using hi-resolution AFM (2013) [Contribution to conference › Poster] Dutch SPM Day 2013 . Sidhu, A. , Segers-Nolten, G. M. J. & Subramaniam, V. Detection of Lymph Node Metastases by Photoacoustic Imaging (2013) [Thesis › PhD Thesis - Research UT, graduation UT] . University of Twente . Grootendorst, D. https://doi.org/10.3990/1.9789036535106 Retrieving the fluorescence quantum yield using a controlled photonic environment (2013) [Contribution to conference › Poster] Focus on Microscopy, FOM 2013 . Prangsma, J. C. , Meijer, L. , Subramaniam, V. & Blum, C. Method for Detection of an Analyte in a Fluid Sample (2013) [Patent › Patent] (Submitted) . Ymeti, A. , Nederkoorn, P. H. J. , Dudia, A. , Kanger, J. S. & Subramaniam, V. Photoacoustic intra-operative nodal staging using clinically approved superparamagnetic iron oxide nanoparticles (2013) In Photons Plus Ultrasound : Imaging and Sensing 2013 (pp. 256) (Proceedings of SPIE; Vol. 8581) . SPIE . Grootendorst, D. , Fratila, R. M. , Visscher, M. , ten Haken, B. , van Wezel, R. J. A. , Steenbergen, W. , Manohar, S. & Ruers, T. J. M. https://doi.org/10.1117/12.2003517 Studying T-Cell Co-Receptors with Magnetic Probes (2013) [Contribution to conference › Poster] 57th Annual Biophysical Society Meeting . Celikkol, B. , Cambi, A. , Figdor, C. , Subramaniam, V. & Kanger, J. S. Nanophotonic control of the Foerster resonance energy transfer efficiency (2013) [Contribution to conference › Poster] Physics@FOM Veldhoven 2013 . Zijlstra, N. , Lagendijk, A. , Wubs, M. , Mosk, A. , Subramaniam, V. , Vos, W. L. & Blum, C. Sierpinsky carpet fractal geometry for optical antennas (2013) [Contribution to conference › Poster] Physics@FOM Veldhoven 2013 . Chen, T. L. , Segerink, F. B. , Dikken, D. J. W. , Prangsma, J. & Herek, J. L. Aggregation conditions strongly influence the molecular composition of alpha-synuclein oligomers (2013) European biophysics journal, 42(Suppl. 1) , S200-S200 . Zijlstra, N. , Blum, C. & Subramaniam, V. https://doi.org/10.1007/s00249-013-0917-x Alpha-synuclein fibrillization plays essential role in membrane disruption (2013) European biophysics journal, 42(Suppl. 1) , S148-S148 . Chaudhary, H. , Subramaniam, V. & Claessens, M. https://doi.org/10.1007/s00249-013-0917-x Alpha-synuclein oligomers distinctively permeabilize model plasma and mitochondrial membranes (2013) European biophysics journal, 42(Suppl. 1) , S156-S156 . Article P-464 . Stefanovic, A. N. D. , Stöckl, M. T. , Claessens, M. M. A. E. & Subramaniam, V. https://doi.org/10.1007/s00249-013-0917-x Au coated Ni nanowires with tuneable dimensions for biomedical applications (2013) Journal of materials chemistry. B: materials for biology and medicine, 1(44) , 6129-6136 . Pondman, K. M. , Maijenburg, A. W. , Celikkol, B. , Pathan, A. A. , Kishore, U. D. , ten Haken, B. & ten Elshof, J. E. https://doi.org/10.1039/C3TB20808G Automated podosome identification and characterization in fluorescence microscopy images (2013) Microscopy and microanalysis, 19(1) , 180-189 . Meddens, M. B. M. , Rieger, B. , Figdor, C. , Cambi, A. & van den Dries, K. https://doi.org/10.1017/S1431927612014018 Can nanophotonics control the Förster resonance energy transfer efficiency? (2013) [Contribution to conference › Paper] 2013 Conference on Lasers and Electro-Optics Europe and International Quantum Electronics Conference, CLEO/Europe-IQEC 2013 . Blum, C. , Zijlstra, N. , Lagendijk, A. , Wubs, M. , Mosk, A. P. , Subramaniam, V. & Vos, W. L. https://doi.org/10.1109/CLEOE-IQEC.2013.6801861 Diffuse reflectance spectroscopy: towards clinical application in breast cancer (2013) Breast cancer research and treatment, 137(1) , 155-165 . Evers, D. J. , Nachabé, R. , Vrancken Peeters, M.-J. , van der Hage, J. A. , Oldenburg, H. S. , Rutgers, E. J. , Lucassen, G. W. , Hendriks, B. H. W. , Wesseling, J. & Ruers, T. J. M. https://doi.org/10.1007/s10549-012-2350-8 Dual-color superresolution microscopy reveals nanoscale organization of mechanosensory podosomes (2013) Molecular biology of the cell, 24(13) , 2112-2123 . van den Dries, K. , Schwartz, S. L. , Byars, J. , Meddens, M. B. M. , Bolomini-Vittori, M. , Lidke, D. S. , Figdor, C. , Lidke, K. A. & Cambi, A. https://doi.org/10.1091/mbc.E12-12-0856 Evaluation of superparamagnetic iron oxide nanoparticles (Endorem) as a photoacoustic contrast agent for intra-operative nodal staging (2013) Contrast media & molecular imaging, 8(1) , 83-91 . Grootendorst, D. , Jose, J. , Fratila, R. M. , Visscher, M. , Velders, A. , ten Haken, B. , van Leeuwen, T. , Steenbergen, W. , Manohar, S. & Ruers, T. J. M. https://doi.org/10.1002/cmmi.1498 Getting a grip on alpha-synuclein amyloid oligomers - single molecule approaches (2013) European biophysics journal, 42(Suppl. 1) , S108-S108 . Article O-277 . Subramaniam, V. https://doi.org/10.1007/s00249-013-0917-x Hepatic resection for metastatic melanoma in The Netherlands: survival and prognostic factors (2013) Melanoma research, 23(1) , 27-32 . de Ridder, J. , van Walsum, M. , Verhoef, C. , Nagtegaal, I. , de Wilt, J. & Ruers, T. J. M. https://doi.org/10.1097/CMR.0b013e32835b70c8 Imaging through scattering media (2013) In Computational Optical Sensing and Imaging, COSI 2013 (Optics InfoBase Conference Papers) . Optical Society of America . Bertolotti, J. , Putten, E. G. , Blum, C. , Lagendijk, A. , Vos, W. L. & Mosk, A. P. https://doi.org/10.1364/cosi.2013.cth2b.2 Improved identification of peripheral lung tumors by using diffuse reflectance and fluorescence spectroscopy (2013) Lung cancer, 80(2) , 165-171 . Spliethoff, J. W. , Evers, D. J. , Klomp, H. M. , van Sandick, J. W. , Wouters, M. W. J. M. , Nachabe, R. , Lucassen, G. W. , Hendriks, B. H. W. , Wesseling, J. & Ruers, T. J. M. https://doi.org/10.1016/j.lungcan.2013.01.016 Interplay between myosin IIA-mediated contractility and actin network integrity orchestrates podosome composition and oscillations (2013) Nature communications, 4 . Article 1412 . van den Dries, K. , Meddens, M. B. M. , de Keijzer, S. , Shekhar, S. , Subramaniam, V. , Figdor, C. G. & Cambi, A. https://doi.org/10.1038/ncomms2402 Magnetic Nanoparticles as Mediators of Ligand-Free Activation of EGFR Signaling (2013) PLoS ONE, 8(7) , 1-11 . Article e68879 . Bharde, A. A. , Palankar, R. , Fritsch, C. , Klaver, A. , Kanger, J. S. , Jovin, T. M. & Arndt-jovin, D. J. https://doi.org/10.1371/journal.pone.0068879 Noninvasive fluorescence imaging through strongly scattering layers (2013) [Contribution to conference › Paper] 2013 Conference on Lasers and Electro-Optics Europe and International Quantum Electronics Conference, CLEO/Europe-IQEC 2013 . Bertolotti, J. , Putten, E. G. , Blum, C. , Lagendijk, A. , Vos, W. L. & Mosk, A. P. https://doi.org/10.1109/CLEOE-IQEC.2013.6801493 Optical sensing for tumor detection in the liver (2013) European journal of surgical oncology, 39(1) , 68-75 . Evers, D. J. , Nachabé, R. , Hompes, D. , van Coevorden, F. , Lucassen, G. W. , Hendriks, B. H. W. , van Velthuysen, M.-L. F. , Wesseling, J. & Ruers, T. J. M. https://doi.org/10.1016/j.ejso.2012.08.005 Optical techniques for the intraoperative assessment of nodal status (2013) Future oncology, 9(11) , 1741-1755 . Grootendorst, D. , Steenbergen, W. , Manohar, S. & Ruers, T. J. M. https://doi.org/10.2217/fon.13.125 Oriented Protein Immobilization using Covalent and Noncovalent Chemistry on a Thiol-Reactive Self-Reporting Surface (2013) Journal of the American Chemical Society, 135(8) , 3104-3111 . Wasserberg, D. , Nicosia, C. , Tromp, E. E. , Subramaniam, V. , Huskens, J. & Jonkheijm, P. https://doi.org/10.1021/ja3102133 Relaxation Phenomena During Polyelectrolyte Complex Formation (2013) In Polyelectrolyte Complexes in the Dispersed and Solid State I: Principles and Theory (pp. 139-172) (Advances in Polymer Science; Vol. 255) . Springer . Lindhoud, S. & Cohen Stuart, M. A. https://doi.org/10.1007/978-3-642-40734-5 Repeats in the α-synuclein sequence determine its conformation on membranes (2013) European biophysics journal, 42(Suppl. 1) , S187-S187 . Shvadchak, V. V. & Subramaniam, V. https://doi.org/10.1007/s00249-013-0917-x Selection of patients for hepatic surgery of colorectal cancer liver metastasis based on genomic aberrations (2013) Annals of surgical oncology, 20(3, suppl) , 560-569 . Bruin, S. C. , de Ronde, J. J. , Wiering, B. , Braaf, L. M. , de Wilt, J. H. W. , Vincent, A. D. , van Velthuysen, M.-L. F. , Ruers, T. J. M. , Wessels, L. F. A. & van 't Veer, L. J. https://doi.org/10.1245/s10434-013-2985-7 Shining light on amyloid protein aggregates: Single-molecule photobleaching of sub-stoichiometrically labeled α-synuclein oligomers reveals molecular composition (2013) Microscopy and analysis (E MEA edition), 2013(7) , 24-24 . Zijlstra, N. , Segers-Nolten, I. , Claessens, M. , Blum, C. & Subramaniam, V. Single-molecule imaging technique to study the dynamic regulation of GPCR function at the plasma membrane (2013) Methods in enzymology, 521 , 47-67 . Snaar-Jagalska, B. E. , Cambi, A. , Schmidt, T. & de Keijzer, S. https://doi.org/10.1016/B978-0-12-391862-8.00003-X State classification of two-population dynamic diffusion systems: comparison of various analysis methods (2013) [Contribution to conference › Poster] Quantitative Bioimaging Conference . Bosch, P. J. , Kanger, J. S. & Subramaniam, V. The Multiple Faces of Prostaglandin E2 G-Protein Coupled Receptor Signaling during the Dendritic Cell Life Cycle (2013) International journal of molecular sciences, 14(4) , 6542-6555 . de Keijzer, S. , Meddens, M. B. M. , Torensma, R. & Cambi, A. https://doi.org/10.3390/ijms14046542 Toward fast and quantitative modification of large gold nanoparticles by thiolated DNA: scaling of nanoscale forces, kinetics, and the need for thiol reduction (2013) The Journal of physical chemistry C, 117(30) , 15677-15684 . Zhang, X. , Gouriye, T. , Göeken, K. , Servos, M. R. , Gill, R. & Liu, J. https://doi.org/10.1021/jp403946x Visualizing signaling nanoplatforms at a higher spatiotemporal resolution (2013) Journal of cell science, 126 , 3817-3821 . Cambi, A. , Lakadamyali, M. , Lidke, D. S. & Garcia Parajo, M. F. https://doi.org/10.1242/jcs.137901

2012

Aggregation and toxicity of amyloid-beta peptide in relation to peptide sequence variation (2012) [Thesis › PhD Thesis - Research UT, graduation UT] . University of Twente . Vandersteen, A. https://doi.org/10.3990/1.9789036534819 Amyloid functionalization: assessment of self-assembly characteristics and development of novel bionanostructures (2012) [Contribution to conference › Poster] Netherlands MicroNanoConference 2012 . Sidhu, A. , Segers-Nolten, G. M. J. & Subramaniam, V. Photoacoustic detection of iron oxide nanoparticles in resected rat lymph nodes (2012) In Biomedical Optics, BIOMED 2012 . Optical Society of America . Grootendorst, D. J. , Jose, J. , Fratila, R. M. , Visscher, M. , Velders, A. H. , Haken, B. T. , Van Leeuwen, T. G. , Steenbergen, W. , Manohar, S. & Ruers, T. J. M. https://doi.org/10.1364/BIOMED.2012.BSu3A.52 Oncologie: technologie op het snijvlak (2012) [Book/Report › Inaugural speech] . University of Twente . Ruers, T. J. M. Size-Selective Detection in an Integrated Young interferometer Biosensor (2012) [Contribution to conference › Poster] Label-free technologies . Mulder, H. , Ymeti, A. , Dudia, A. , Subramaniam, V. & Kanger, J. S. A comparative analysis of the aggregation behavior of amyloid-beta peptide variants (2012) FEBS letters, 586(23) , 4088-4093 . Vandersteen, A. , Hubin, E. , Sarroukh, R. , de Baets, G. , Schymkowitz, J. , Rousseau, F. , Subramaniam, V. , Raussens, V. , Wenschuh, H. , Wildemann, D. & Broersen, K. https://doi.org/10.1016/j.febslet.2012.10.022 Stress-strain measurements of single micro and nanoscale fibers with modified AFM cantilevers (2012) [Contribution to conference › Poster] 4th Multifrequency Conference . Bennink, M. L. , van der Werf, K. , Sijbrandi, N. J. , Dijkstra, P. J. , Feijen, J. & Subramaniam, V. Method for Detection of an Analyte in a Fluid Sample (2012) [Patent › Patent] . Ymeti, A. , Nederkoorn, P. H. J. , Dudia, A. , Kanger, J. S. & Subramaniam, V. Amyloid functionalization: assessment of self-assembly characteristics and development of novel bionanostructures (2012) [Contribution to conference › Poster] Annual Dutch meeting on Molecular and Cellular Biophysics 2012 . Sidhu, A. , Segers-Nolten, G. M. J. & Subramaniam, V. Establishing the composition of α-synuclein amyloid oligomers using single-molecule photobleaching (2012) [Contribution to conference › Poster] Annual Dutch meeting on Molecular and Cellular Biophysics 2012 . Zijlstra, N. , Blum, C. , Segers-Nolten, I. , Claessens, M. & Subramaniam, V. Hierarchical self-assembly of alpha-synuclein protein (2012) [Contribution to conference › Poster] Annual Dutch meeting on Molecular and Cellular Biophysics 2012 . Semerdzhiev, S. A. , Dekker, D. R. , Claessens, M. M. A. E. & Subramaniam, V. Local Manipulation of Receptor Aggregation States Using Magnetic Nanoparticles (2012) [Contribution to conference › Poster] EMBL-Olympus Course on Advanced Imaging Techniques 2012 . Celikkol, B. , Cambi, A. , Figdor, C. , Subramaniam, V. & Kanger, J. S. Molecular composition of sub-stoichiometrically labeled alpha-synuclein oligomers determined by single-molecule photobleaching (2012) [Contribution to conference › Poster] Annual Dutch meeting on Molecular and Cellular Biophysics 2012 . Zijlstra, N. , Blum, C. , Segers-Nolten, G. M. J. , Claessens, M. M. A. E. & Subramaniam, V. Oligomeric alpha-synuclein elicits permeability of model systems mimicking synaptic vesicles, neuronal and mitochondrial membranes (2012) [Contribution to conference › Poster] Annual Dutch meeting on Molecular and Cellular Biophysics 2012 . Stefanovic, A. , Stöckl, M. T. , Zijlstra, N. , Claessens, M. M. A. E. & Subramaniam, V. Probing a-synuclein-membrane interactions on supported lipid bilayers (2012) [Contribution to conference › Poster] Annual Dutch meeting on Molecular and Cellular Biophysics 2012 . Iyer, A. S. , Stöckl, M. T. , Claessens, M. M. A. E. & Subramaniam, V. Single molecule tracking microscopy and analysis methods to monitor the dynamic behaviour of EGF receptors on the cell membrane (2012) [Contribution to conference › Poster] Annual Dutch meeting on Molecular and Cellular Biophysics 2012 . Bosch, P. J. , Kanger, J. S. & Subramaniam, V. Structural diversity of the beta-lactoglobulin fibrils (2012) [Contribution to conference › Poster] Annual Dutch meeting on Molecular and Cellular Biophysics 2012 . Subramani, R. , Subramaniam, V. & Bennink, M. L. The influence of natural compounds on aggregation and degradation of a-Synuclein aggregates (2012) [Contribution to conference › Poster] Annual Dutch meeting on Molecular and Cellular Biophysics 2012 . Dekker, D. R. , Auffermann, N. , Claessens, M. M. A. E. & Subramaniam, V. The neck region of the C-type lectin DC-SIGN regulates its surface spatiotemporal organization and virus-binding capacity on antigen presenting cells (2012) Journal of biological chemistry, 287(46) , 38946-38955 . Manzo, C. , Torreno-Pina, J. A. , Joosten, B. , Reinieren-Beeren, I. , Gualda, E. J. , Loza-Alvarez, P. , Figdor, C. , Garcia Parajo, M. F. & Cambi, A. https://doi.org/10.1074/jbc.M112.380121 A method for spatially resolved local intracellular mechanochemical sensing and organelle manipulation (2012) Biophysical journal, 103(3) , 395-404 . Shekhar, S. , Cambi, A. , Figdor, C. , Subramaniam, V. & Kanger, J. S. https://doi.org/10.1016/j.bpj.2012.06.010 Size-selective detection in integrated optical interferometric biosensors (2012) Optics express, 20(19) , 20934-20950 . Mulder, H. , Ymeti, A. , Subramaniam, V. & Kanger, J. S. https://doi.org/10.1364/OE.20.020934 Molecular plasticity regulates oligomerization and cytotoxicity of the multi-peptide length Abeta pool (2012) Journal of biological chemistry, 287(44) , 36732-36743 . Article 36732 . Vandersteen, A. , Masman, M. F. , de Baets, G. , Jonckheere, W. , van der Werf, K. , Marrink, S. J. , Rozenski, J. , Benilova, I. , De Strooper, B. , Subramaniam, V. , Schymkowitz, J. , Rousseau, F. & Broersen, K. https://doi.org/10.1074/jbc.M112.394635 Photoacoustic Nodal Metastases detection in a rat model using a clinical superparamagnetic iron oxide nanoparticle dispersion (2012) [Contribution to conference › Poster] 32nd Congress of the European Society of Surgical Oncology 2012 . Grootendorst, D. , Fratila, R. M. , Visscher, M. , ten Haken, B. , van Wezel, R. J. A. , Steenbergen, W. , Manohar, S. & Ruers, T. J. M. https://doi.org/10.1016/j.ejso.2012.06.349 Alpha-synuclein oligomers elicit permeability of model systems mimicking mitochondrial membranes (2012) [Contribution to conference › Poster] MESA+ Meeting 2012 . Stefanovic, A. , Stöckl, M. T. , Claessens, M. M. A. E. & Subramaniam, V. Method for Detection of an Analyte in a Fluid Sample (2012) [Patent › Patent] . Ymeti, A. , Nederkoorn, P. H. J. , Dudia, A. , Kanger, J. S. & Subramaniam, V. Multi spectral photoacoustic imaging of melanoma metastasis in resected human lymph nodes (2012) [Contribution to conference › Poster] WMIC . Grootendorst, D. , Langhout, G. , Jose, J. , Fuchs, D. A. , Steenbergen, W. , Manohar, S. & Ruers, T. J. M. Sensing with colors (2012) [Thesis › PhD Thesis - Research UT, graduation UT] . University of Twente . Ungureanu, F. https://doi.org/10.3990/1.9789036533980 Local Manipulation of Receptor Aggregation States using Magnetic Nanoparticles (2012) [Contribution to conference › Poster] EMBO Conference on Physics of Cells: From Soft to Living Matter 2012 . Celikkol, B. , Cambi, A. , Figdor, C. , Subramaniam, V. & Kanger, J. S. Scattering gold nanoparticles: strategies for ultra sensitive DNA detection (2012) [Thesis › PhD Thesis - Research UT, graduation UT] . University of Twente . Verdoold, R. https://doi.org/10.3990/1.9789036534086 Local Manipulation of Receptor Aggregation States Using Magnetic Nanoparticles (2012) [Contribution to conference › Poster] Pierre-Gilles de Gennes Advanced School on Cellular Biophysics . Celikkol, B. , Cambi, A. , Figdor, C. , Subramaniam, V. & Kanger, J. S. Method for Detection of an Analyte in a Fluid Sample (2012) [Patent › Patent] . Ymeti, A. , Nederkoorn, P. H. J. , Dudia, A. , Kanger, J. S. & Subramaniam, V. Multi-dimensional blinking statistics of CdSe core-shell quantum dots (2012) [Contribution to conference › Poster] Hole-burning Single Molecule Conference . Stopel, M. H. W. , Blum, C. & Subramaniam, V. System for Analysis of a Fluid (2012) [Patent › Patent] . Ymeti, A. , Nederkoorn, P. H. J. , Kanger, J. S. , Dudia, A. & Subramaniam, V. Molecular Composition of Sub-stoichiometrically Labeled alpha-Synuclein Oligomers Determined by Single-Molecule Photobleaching (2012) Angewandte Chemie (international edition), 51(35) , 8821-8824 . Zijlstra, N. , Blum, C. , Segers-Nolten, G. M. J. , Claessens, M. M. A. E. & Subramaniam, V. https://doi.org/10.1002/anie.201200813 Silver nanoparticles aggregates as highly efficient optical antennas for fluorescence enhancement (2012) [Contribution to conference › Poster] Noble Metal Nanoparticles: Gordon Research Conference 2012 . Gill, R. , Tian, L. , Amerongen, H. , le Ru, E. C. , Somerville, W. R. C. & Subramaniam, V. Nanoscale Structural and Mechanical Properties of Alpha-Synuclein Amyloid Fibrils (2012) [Thesis › PhD Thesis - Research UT, graduation UT] . University of Twente . Sweers, K. K. M. https://doi.org/10.3990/1.9789036533485 Development of a Multi-Wavelength Integrated Young Interferometer Biosensor (2012) [Contribution to conference › Poster] World Congress on Biosensors, Biosensors 2012 . Mulder, H. , Ymeti, A. , Dudia, A. , Subramaniam, V. & Kanger, J. S. Redefining circulating tumor cells by image processing (2012) [Thesis › PhD Thesis - Research UT, graduation UT] . University of Twente . Ligthart, S. https://doi.org/10.3990/1.9789036533645 System for Analysis of a Fluid (2012) [Patent › Patent] . Ymeti, A. , Nederkoorn, P. H. J. , Kanger, J. S. , Dudia, A. & Subramaniam, V. Evanescent-field intra-cavity sensing with a dual-wavelength distributed-feedback laser (2012) In Conference on Lasers and Electro-Optics: Science and Innovations (CLEO: S and I) (pp. Paper CM3B.5) . Optical Society of America . Bernhardi, E. , van der Werf, K. , Hollink, A. , Worhoff, K. , de Ridder, R. M. , Subramaniam, V. & Pollnau, M. http://eprints.eemcs.utwente.nl/secure2/21901/01/CLEO_2012_Bernhardi_RF_sensor.pdf Photoacoustic metastases detection using clinically approved SPIO dispersions (2012) [Contribution to conference › Poster] Conference on Biomedical Optics, BIOMED 2012 . Grootendorst, D. , Jose, J. , Fratila, R. M. , Visscher, M. , Velders, A. , ten Haken, B. , van Leeuwen, T. , Steenbergen, W. , Manohar, S. & Ruers, T. J. M. Insights into Phagosome Maturation using Magnetic Tweezers (2012) [Thesis › PhD Thesis - Research UT, graduation UT] . University of Twente . Shekhar, S. https://doi.org/1.9789036533430 Effect of ApoE isoform and lipidation status on proteolytic clearance of the Amyloid-beta peptide (2012) [Contribution to conference › Poster] NVMS-BSMS International Congress on Mass Spectrometry . Hubin, E. , Rozenski, J. , Subramaniam, V. , van Nuland, N. & Broersen, K. Shining light on amyloid protein aggregates: Establishing the composition of α-synuclein amyloid oligomers using single-molecule photobleaching (2012) [Contribution to conference › Abstract] Focus on Microscopy, FOM 2013 . Zijlstra, N. , Segers-Nolten, I. , Claessens, M. , Blum, C. & Subramaniam, V. Effect of ApoE isoform and lipidation status on proteolytic clearance of Amyloid-beta peptide (2012) [Contribution to conference › Poster] ApoE, Alzheimer's disease and Lipoprotein Biology, Keystone symposia . Hubin, E. , Rozenski, J. , De Strooper, B. , Subramaniam, V. , van Nuland, N. & Broersen, K. Establishing the molecular composition of alpha-synuclein oligomers by sub-stoichiometric labeling and single-molecule photobleaching (2012) [Contribution to conference › Poster] 56th Annual Biophysical Society Meeting 2012 . Zijlstra, N. , Blum, C. , Segers-Nolten, G. M. J. , Claessens, M. M. A. E. & Subramaniam, V. 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Spectroscopic characterization of enhancement of dye fluorescence in silver nanoparticle aggregates (2012) [Contribution to conference › Poster] Physics@FOM Veldhoven 2012 . Gill, R. , Tian, L. , Amerongen, H. & Subramaniam, V. Establishing the molecular composition of alpha-synuclein oligomers by sub-stoichiometric labeling and single-molecule photobleaching (2012) [Contribution to conference › Poster] Physics@FOM Veldhoven 2012 . Zijlstra, N. , Blum, C. , Segers-Nolten, G. M. J. , Claessens, M. M. A. E. & Subramaniam, V. Answer to energy transfer debate could impact areas from photovoltaics to quantum information (2012) [Non-textual form › Web publication/site] . Blum, C. http://phys.org/news/2012-11-energy-debate-impact-areas-photovoltaics.html Application potential of food protein modification (2012) In Advances in Chemical Engineering (pp. 135-182) . IntechOpen . de Jongh, H. H. 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A. , ten Haken, B. , van Leeuwen, T. , Steenbergen, W. , Manohar, S. & Ruers, T. J. M. https://doi.org/10.1002/lsm.22058 Kinetic measurements give new insights into lipid membrane permeabilization by alpha-synuclein oligomers (2012) Molecular biosystems, 8(1) , 338-345 . Stöckl, M. T. , Claessens, M. M. A. E. & Subramaniam, V. https://doi.org/10.1039/c1mb05293d Locally Resolved Membrane Binding Affinity of the N-Terminus of α-Synuclein (2012) Biochemistry (USA), 51(19) , 3960-3962 . Robotta, M. , Hintze, C. , Schildknecht, S. , Zijlstra, N. , Jungst, C. , Karreman, C. , Huber, M. , Leist, M. , Subramaniam, V. & Drescher, M. https://doi.org/10.1021/bi300357a Mechanical testing of electrospun PCL fibers (2012) Acta biomaterialia, 8(1) , 218-224 . Croisier, F. , Duwez, A.-S. , Jerome, C. , Leanard, A. F. , van der Werf, K. , Dijkstra, P. J. & Bennink, M. 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M. , van der Werf, K. , Bennink, M. L. & Subramaniam, V. https://doi.org/10.1039/c2nr12066f Structural model for alpha-synuclein fibrils derived from high resolution imaging and nanomechanical studies using atomic force microscopy (2012) Soft matter, 8(27) , 7215-7222 . Sweers, K. K. M. , Segers-Nolten, G. M. J. , Bennink, M. L. & Subramaniam, V. https://doi.org/10.1039/c2sm25426c Studying membrane properties using Fluorescence Lifetime Imaging Microscopy (FLIM) (2012) In Fluorescent methods to study biological membranes (pp. 215-240) (Springer series on fluorescence; Vol. 13) . Springer . Stöckl, M. T. , Bizzarri, R. & Subramaniam, V. https://doi.org/10.1007/4243_2012_48 The influence of ionic strength on the adhesive bond stiffness of oral streptococci possessing different surface appendages as probed using AFM and QCM-D (2012) Soft matter, 8(38) , 9870-9876 . Olsson, A. L. J. , Narasimhan, A. , Kanger, J. S. , Busscher, H. J. , Ivanov, I. E. , Camesano, T. A. , Chen, Y. , Johannsmann, D. , van der Mei, H. C. & Sharma, P. K. https://doi.org/10.1039/C2SM26025E The structural basis for increased toxicity of pathological Abeta42:Abeta40 ratios in Alzheimer's disease (2012) Journal of biological chemistry, 287 , 5650-5660 . Pauwels, K. , Williams, T. L. , Morris, K. L. , Jonckheere, W. , Vandersteen, A. , Kelly, G. , Schymkowitz, J. , Rousseau, F. , Pastore, A. , Serpell, L. C. & Broersen, K. https://doi.org/10.1074/jbc.M111.264473 Tri- and pentamethine cyanine dyes for fluorescent detection of alpha-synuclein oligomeric aggregates (2012) Journal of fluorescence, 22(6) , 1441-1448 . Kovalska, V. B. , Yu Losytskyy, M. , Tolmachev, O. I. , Slominskii, Y. L. , Segers-Nolten, G. M. J. , Subramaniam, V. & Yarmoluk, S. M. https://doi.org/10.1007/s10895-012-1081-x